Scaffold Ga0181359_1001623

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1001623
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6146
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (29.41%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F008081	Metagenome / Metatranscriptome	339	Y
F024318	Metagenome	206	Y
F036704	Metagenome	169	Y
F047062	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100162313	F024318	GGA	MIPYLYLGKFIKRPGDLAPKGVKSTCQNEKLPFNETFEKIWQLVSMKA
Ga0181359_10016233	F001775	GAG	MEFSTDNQKIKIALISFLGGVIAAYIFLPKPEAETFYKFSTKVETDTIYTQVRDTVYVPKKWIKSQIIRDTVLINYKPQISLFKASIPSEYGSTHLSGEVLGEVLKMTATNDFKIPVVTNTITETKTETIIKKPKGIYLGASVNSLLQPGAKVSYLDNKYLFSYQYQPLEKLHTLSVSKKLF
Ga0181359_10016234	F036704	N/A	MWIEIDVMLGGSTMDWAELGIEVKHEFVRRMVRVEDISYVQELVHDIQVIYFYDKTSCLLRGSYQEIRDELLHLDQEGQLE
Ga0181359_10016237	F008081	N/A	MEESKILNPFGYGKASRVIDENRKPQEWWIDYISINQVTAENEFYVLFEDGCLVKKGRSKFRSSQYLKGDRFRSFAACHQLIT
Ga0181359_10016239	F047062	N/A	MNYETENFHDQEITFTYEGQDYLWIGDYTIEHTGEDESEFAPAYGEMEITIEYTRSLSSYEHGYEVIPTRSMLMELELEIERNY