Scaffold Ga0181359_1000809

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1000809
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 7569
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023351	Metagenome / Metatranscriptome	210	Y
F045097	Metagenome / Metatranscriptome	153	Y
F068832	Metagenome / Metatranscriptome	124	Y
F070111	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100080914	F070111	AGAAGG	MHKVEVTLTTDQFDTMVVEELIRTRQTFLNDLGANNHVFVYGDQEADDIEIQKHIDSLDQLIKWFGTEKQIEEVYGNEG
Ga0181359_100080915	F045097	AGGAGG	MRADDIKQKAIEVIPYVAVFGVAALAVYGITKIVRAVNDLDYPLDFGSDEYLTGLSKKCHED
Ga0181359_100080917	F023351	AGGA	MVKESKGGTFAPADYPVIKRALHSYLVECLRAEGVSERDPHPDVVVISNLLHRLGRIDE
Ga0181359_10008099	F068832	N/A	MSEVVEKNMFLETVKWIGTACVIVAATCRAFEFHTVDLILSIFGAALWGYAAYEMKDKPLIVVNGFITAILLYGVVK