Scaffold Ga0181359_1000522

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1000522
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8718
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (78.57%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002037	Metagenome / Metatranscriptome	600	Y
F003066	Metagenome / Metatranscriptome	509	Y
F004950	Metagenome	417	Y
F024784	Metagenome	204	Y
F068573	Metagenome	124	Y
F091612	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10005221	F091612	AGGA	VSNKDKILEYLTEPKTIKAIAEHVDANYHTIKNLLVAMKMEGLLYAYKDSDNRLMHYYVPQPHPLQ
Ga0181359_100052221	F003066	AGGA	MKKEPLAFLYEEFCTKSGDLKKSYLWSFHPNQLSYLNDLKNTTHHIKITPLFAGEPVEEYKGISKYDSKKLVEAYGGI
Ga0181359_100052222	F068573	GGAGG	MVESSPLTQEEIIKAYNKAFPTRYEPMTLERMIQFVRIIEQAHGIKDAV
Ga0181359_100052225	F024784	AGGA	MAILEKVIDWIVWLLIVGGMGWFAYGCYQLIDLFFLRR
Ga0181359_100052227	F002037	AGG	MNKIYWVFIIVLAALAIWGTEKALGQTTTILAPDGSVTVCQVGSNGIIICV
Ga0181359_10005223	F004950	AGGAG	MGKGSGRRPLLVSEKEAQDNWDKIFKKKNNSPDVSPHAYEYELNKATGDVEKRFLDGISKPNKSQFDGK