Scaffold Ga0181359_1000210

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1000210
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 12268
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (45.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011143	Metagenome / Metatranscriptome	294	Y
F020143	Metagenome	225	N
F026865	Metagenome / Metatranscriptome	196	N
F036148	Metagenome	170	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100021017	F036148	N/A	MATKKPRKAPQRRRRTPRKAEALSKLENHYITLNELFRAAKSAGFSHEVAFWLITEPGASMPDWINPSNQPTEIIPRIDPTEDEDND
Ga0181359_10002105	F011143	AGG	MHKIEIVKKDGKKVTYDLTPSAKVAFEAEFKTGWRKRLGELQMESDLWWFAWRLEKDAGKTDLAFGDDYINQYSDIDLVYDSKNG
Ga0181359_10002106	F026865	N/A	VATGISPKDLLEVDPAIYSAIKAILQERYYNNKKATVRRK
Ga0181359_10002107	F020143	AGGCGG	MRPLYARLPGRTRSLAAVPSIYVENLDELMATMKKIEPDLHKEFRRELTKAVKPVAKLAQSFVPYSPFPGWRDVEPSYPPAWGWANDQAHRGRTFGESKRSRWKWSQVEVIRGIRVSAAKTKVQRVKGTTFSVTALAVLNKSVPGIIYELAGFGTSKSRSKTRRISRNLNASESFIGKLQGTASSGAYKEKRLIYRASQQLGGQVNDNLYGVLKKYLGEKFRG