Scaffold Ga0181359_1000166

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1000166
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 13385
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (36.84%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003579	Metagenome / Metatranscriptome	478	Y
F005113	Metagenome / Metatranscriptome	411	Y
F009125	Metagenome	322	Y
F013396	Metagenome	271	N
F016125	Metagenome	249	N
F026503	Metagenome	197	N
F063471	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100016612	F009125	N/A	MNSDNIKATLTAATPAAAMMSLSQVNEVAALVGTLLGIAFLLWRWRREAKLKD
Ga0181359_100016615	F013396	N/A	VTLRRSLLLAVLALGLVVVLGLALRSERVLTAGLPLRIVAKSQEEARTLAGLGSVAVLGTGSMAPYIAAAPKGTDPLATVMAYAVPSTSLRYGDITTGALVIYSINYVAGSNTMHQAAQLDAGGWIMTGLGNKAYENKVRVTAENFVGIVARVYVWTP
Ga0181359_100016616	F005113	N/A	MTKEEHKSAIVQQLQQQSLNLLVDSLAAALAEIEQLKAAAADKPTP
Ga0181359_100016617	F003579	N/A	MTIPIAPYTMGSPAQPKVGTLFEVRYIQYTQPTAVADCHLLDAEGVEIMPVGLVPATAEQCAAWTDDATFAGVLAVNAGFELLP
Ga0181359_10001665	F026503	GAGG	MIDIETSFSRLEYQLARLANAAKVDLGLVIKEEAKYAIQTIVKFTPPKSKQQGANAVRADFSRLAEPLVFEDLQAKATKGGFYKSMARYVRNRDVEKLRALFRNPNLTHYYGRPLLENEDAIRKYKKEQQTPWRRIKGKPRVLAFGSDFRRVRAMMEDRVGWTVSGWNSSAKVTGARYKKFSDKLKAQAGGNIRFGSVQSSFGPQPFIKATAHNVKIPNYQRMIDAAINSRVRTTEKKVAAVLANRAVNLGFTRVGGAMQIKTAAA
Ga0181359_10001666	F016125	AGGAGG	MAAVRDFDPTQINSDFSAILEQAGVSFTYQGVSVTGIWSSSRDAFSEFEDQRRTDSKFTVFLLTSSVSATPQVTQTLSRASVTYFIERVTLDAEGAGCEIEVAKSI
Ga0181359_10001669	F063471	N/A	MYTNSAAIFRGDIAGVVEQAKDFEAGLIGTAVMPILDVPVRAGQYPSFVLKEGQLLKSDVKNRAAYSAYPRGTRAFNQDTYTALEYGYEEAVDDTVTLDVARFFDAEVIAAKLAKRKLLLAHELRVAAKLFDNSTFTATNSGTAYTTANLATFDAGADVQEAIDRLLAKGESVTNLSVIIPYPVWTRIRASTKFQNRLRGAGISSDTILNASTQAAAEVFGVASVQIGRASYDTAPEGVAFAAGNVWANTFIWVGSVTQASAGFFGGGAGFTLNWSEYGPAIGVSTYREEAIKSNIVRASHFVAEKVVNANAGQLITTQFS