Basic Information | |
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Taxon OID | 3300019784 Open in IMG/M |
Scaffold ID | Ga0181359_1000158 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13760 |
Total Scaffold Genes | 28 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (71.43%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F006985 | Metagenome / Metatranscriptome | 360 | Y |
F011142 | Metagenome / Metatranscriptome | 294 | Y |
F035668 | Metagenome / Metatranscriptome | 171 | Y |
F059760 | Metagenome / Metatranscriptome | 133 | N |
F068428 | Metagenome | 124 | Y |
F077016 | Metagenome | 117 | Y |
F102815 | Metagenome / Metatranscriptome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0181359_100015812 | F011142 | AGAAG | MAQVKVTGKVNKVFGASNQGLSLVESYKSATGEDYTRTWTVWFAVSHNLAVDTEVTVTGQLSAKIEDFEDKTGKPGRKVKLDVNNAVVAEAKPAVSADLPF |
Ga0181359_100015816 | F102815 | AGG | MRSPEELFLDAVDAYKAWVACGKDFVNHAHLFDVWDDAVTAYGQSVFLERNRAVHQVLQGLDLVQ |
Ga0181359_100015818 | F077016 | AGGA | VPTNSAENVREFYRKQGEERERTRLIELLKEQNVIRNCGATGKLVFVNCNTLEVLYLKEISDE |
Ga0181359_100015819 | F059760 | AGGA | MSNPETKEQLVSNTADAITSAIQSSRDNAVEAVISIVESYKKLQLPAIPKDAYDLGARDSIDTLLIHLNKFAEGLKQGRTE |
Ga0181359_100015820 | F035668 | AGG | MTCNNCQDGCKCARVNSVNIFSRDYKAGQAHGQRDEHTRTSDALIELERSGVITNAQMQAVLDLILEKLTDAMDIP |
Ga0181359_100015824 | F068428 | GAG | MLEDLQLPKRNTPCRIRTLKSELTDKDALILETAVMNPEWPYKTLSNELYKRGTKVSDAAIKHHREKRCSCWKD |
Ga0181359_100015826 | F006985 | N/A | VQHDSLDLVGRKMIRETCSCGAEFETDDREAIELVKLWRKSHKHTSKPSTAAERDSSTLSNTEVSLGFQAIYDPLKEEIE |
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