Scaffold Ga0181359

Basic Information
Taxon OID	3300019784 Open in IMG/M
Scaffold ID	Ga0181359_1000158 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300019784 Open in IMG/M

Scaffold ID

Ga0181359_1000158 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	13760
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (71.43%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

13760

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (71.43%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1881	Long. (^o)	-86.344	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.1881

Long. (^o)

-86.344

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006985	Metagenome / Metatranscriptome	360	Y
F011142	Metagenome / Metatranscriptome	294	Y
F035668	Metagenome / Metatranscriptome	171	Y
F059760	Metagenome / Metatranscriptome	133	N
F068428	Metagenome	124	Y
F077016	Metagenome	117	Y
F102815	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100015812	F011142	AGAAG	MAQVKVTGKVNKVFGASNQGLSLVESYKSATGEDYTRTWTVWFAVSHNLAVDTEVTVTGQLSAKIEDFEDKTGKPGRKVKLDVNNAVVAEAKPAVSADLPF
Ga0181359_100015816	F102815	AGG	MRSPEELFLDAVDAYKAWVACGKDFVNHAHLFDVWDDAVTAYGQSVFLERNRAVHQVLQGLDLVQ
Ga0181359_100015818	F077016	AGGA	VPTNSAENVREFYRKQGEERERTRLIELLKEQNVIRNCGATGKLVFVNCNTLEVLYLKEISDE
Ga0181359_100015819	F059760	AGGA	MSNPETKEQLVSNTADAITSAIQSSRDNAVEAVISIVESYKKLQLPAIPKDAYDLGARDSIDTLLIHLNKFAEGLKQGRTE
Ga0181359_100015820	F035668	AGG	MTCNNCQDGCKCARVNSVNIFSRDYKAGQAHGQRDEHTRTSDALIELERSGVITNAQMQAVLDLILEKLTDAMDIP
Ga0181359_100015824	F068428	GAG	MLEDLQLPKRNTPCRIRTLKSELTDKDALILETAVMNPEWPYKTLSNELYKRGTKVSDAAIKHHREKRCSCWKD
Ga0181359_100015826	F006985	N/A	VQHDSLDLVGRKMIRETCSCGAEFETDDREAIELVKLWRKSHKHTSKPSTAAERDSSTLSNTEVSLGFQAIYDPLKEEIE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181359_1000158

Overview

Ecosystem & Geography

Associated Families

Sequences