NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1000158

Scaffold Ga0181359_1000158


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1000158 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)13760
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (71.43%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006985Metagenome / Metatranscriptome360Y
F011142Metagenome / Metatranscriptome294Y
F035668Metagenome / Metatranscriptome171Y
F059760Metagenome / Metatranscriptome133N
F068428Metagenome124Y
F077016Metagenome117Y
F102815Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100015812F011142AGAAGMAQVKVTGKVNKVFGASNQGLSLVESYKSATGEDYTRTWTVWFAVSHNLAVDTEVTVTGQLSAKIEDFEDKTGKPGRKVKLDVNNAVVAEAKPAVSADLPF
Ga0181359_100015816F102815AGGMRSPEELFLDAVDAYKAWVACGKDFVNHAHLFDVWDDAVTAYGQSVFLERNRAVHQVLQGLDLVQ
Ga0181359_100015818F077016AGGAVPTNSAENVREFYRKQGEERERTRLIELLKEQNVIRNCGATGKLVFVNCNTLEVLYLKEISDE
Ga0181359_100015819F059760AGGAMSNPETKEQLVSNTADAITSAIQSSRDNAVEAVISIVESYKKLQLPAIPKDAYDLGARDSIDTLLIHLNKFAEGLKQGRTE
Ga0181359_100015820F035668AGGMTCNNCQDGCKCARVNSVNIFSRDYKAGQAHGQRDEHTRTSDALIELERSGVITNAQMQAVLDLILEKLTDAMDIP
Ga0181359_100015824F068428GAGMLEDLQLPKRNTPCRIRTLKSELTDKDALILETAVMNPEWPYKTLSNELYKRGTKVSDAAIKHHREKRCSCWKD
Ga0181359_100015826F006985N/AVQHDSLDLVGRKMIRETCSCGAEFETDDREAIELVKLWRKSHKHTSKPSTAAERDSSTLSNTEVSLGFQAIYDPLKEEIE

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