Scaffold Ga0181359_1000062

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1000062
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 20987
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (78.95%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029419	Metagenome / Metatranscriptome	188	Y
F035302	Metagenome	172	Y
F036680	Metagenome	169	Y
F041650	Metagenome	159	N
F059960	Metagenome / Metatranscriptome	133	Y
F081323	Metagenome / Metatranscriptome	114	Y
F082668	Metagenome	113	N
F091376	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10000621	F059960	N/A	RRGLKDRVKAVDVALREAGFDHKYMTPEIDVEVAVQELKTETASLNRGKKKKE
Ga0181359_100006214	F041650	GGA	MREDIQLSFIECQMPRTPYQLERFVVGQHDTPEMQFVQVCRELEALYYTIKEVGMANKKTELEIAKLRATGDEIDAIDADIKELGLERTRLVAIGARRELDELIKMYDAMPHFTRQQIDESQPDYWQARLGRQANLQMMAGGAGWAHLEALDQIGVLKPMIQAQQEKAKELL
Ga0181359_100006215	F091376	AGGA	MKYAQWTISRPEGSTPEPLIRSRGGQASGGFMKDAETVVGYVWSDCDLTGLDKWNFSTMTNTQAMTIAKGLNPECFFGDDGTIQAPQVAV
Ga0181359_100006217	F035302	N/A	MQRIYTGNKDGIATGERKGLTVFINQLCKRYPALWNNGSFVNRSMRGKQGVLSVHATGRAVDLSFRFKPNHKDSSNTKGIKEGGRKQAMQAMDFVVKHADAFGLECILDYYPIPHGRGWRCDRKAWTVYTKSEIHGAPMGDWLHFELSPKMADDAEAMRAAFSAIPLTVEAI
Ga0181359_100006218	F082668	GAGG	MDSSAIVVALIGAIGAIIVGFMQSFKKEAREANKTNSEDHAIVQSQLRMIFKTVNRVDDKLEKHINQHEEGTLNGQVTRSDKKLT
Ga0181359_100006231	F029419	AGG	MSDERKGDCQGNKEKCTLTDCPKFGTLGRPSKDGDKRVKGCADPTARGKRSRTKGLSKQRVARKRLGVAPSNKFGDANEENWQDVLFANEVKSGKQIGAVVTAWGRIDAQVRSNESDYGSRCKPTRAILMPDDWGKEGLVIIKLSTWEELVRPAMHDFYEGTA
Ga0181359_100006237	F036680	AGGAGG	MKVTKHSLDHIELVSSGDTALFEIRLVVAMNDWTDEAEDMGALDWLMNLLSLASEGTDITTGAQEFLKSMMTLSEERVHLCKVEKVDYNIDEIGNK
Ga0181359_10000624	F081323	AGGA	MTNYKVISDNCTLGKQGDNINGDDLEGLNVDALVAGGHLAEVNVKVLKQEPKEMDK