Scaffold Ga0181359_1000011

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1000011
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 40899
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (87.14%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018164	Metagenome / Metatranscriptome	236	Y
F018698	Metagenome / Metatranscriptome	233	Y
F020883	Metagenome	221	Y
F025215	Metagenome	202	Y
F029734	Metagenome / Metatranscriptome	187	N
F036663	Metagenome / Metatranscriptome	169	N
F042747	Metagenome / Metatranscriptome	157	Y
F053803	Metagenome	140	N
F055673	Metagenome / Metatranscriptome	138	Y
F064418	Metagenome / Metatranscriptome	128	N
F078625	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100001112	F042747	AGGAGG	MMGYKYEDIQKFGSALNGAEFYLPPNDTEIREGLIKIWDFFEGLLAEGYVEGEEISNV
Ga0181359_100001115	F020883	GAGG	MNASFRIEQVSFLLDQYREATHRLGMQDLAIWQSLEDIYKRPELHDLTLLSTREEAFDKIVKDNWFVDMGQHYYGLDYETIDELTLEYLKDNQLVKEINND
Ga0181359_100001118	F025215	AGGAG	MKVKVCDPSGEVIAEVYDYAAGALLMSLYGDGSTIRHKNVILWLEGADGEGANSYDTTAMTIDERLRKVGARV
Ga0181359_10000112	F078625	AGGAG	MFGKQGKSAKAPVGTAIMGKKPAGKIVGGGMVKQGVTPKGIKGNNNKVK
Ga0181359_100001125	F064418	AGG	MHKGLLLSKPRPTEIKLVAKLLDPDADNSEDATALAIEIIEALDKSRTKRESFIVVAKLADWVPVQAWGEFNTRLQAEKFFPNLSSPDTGGKGAIVRLENPDDLLKRIGAQ
Ga0181359_100001140	F053803	AGGA	MEVELTEDEIIDSLRFIHRVRQNKKEFDVTDRKFDKNNSSYSVNLMGRLGEVACSRVLGIPTDKTITPGGDNGHDLISVLGKSIQVKTSTLSQLIFNAPELFISDVAVLVKFSGDKQLPHVDSLFDVIGWTTRENFLANHYLHDYGYGTRLVMDANQLQPIEVLINEISRLH
Ga0181359_100001145	F036663	N/A	MDTNKLLTLVGPDERSELVTKVRIALNVAGDDVLDAPLQEMLKGLQRRIDIPAVGCINIATLDALAVAPPEW
Ga0181359_100001158	F018164	AGG	MTKIFRGPTYRYRLGRPNDLWFVSYPIGKSVIKNNGTWSTVVVPKDSDLATYQRVLRGGYDNVITDAEAAELTAAGYGDYIWDE
Ga0181359_10000116	F029734	AGGA	MRTVESKTLVGVVKNGVVHVSQADSKRIFAKVRITTNTAKSSKKIEAILSAFKAYPNFTLVASEIAKVEPKAYLTLKGSVA
Ga0181359_100001163	F018698	GGAG	MAEYTEYDFEDDSSDFGTDLVKKLRKQVDLLSKEIKERDQVIEEFQTYSHEASVGEILAGFGLSPKIAQFIPAEIEADEDSISEWLTEYGEAFGITAVDESEAGYEPDADAQSFEQISDFENGDMDPNVGRDISSLIANATSPEELTNFLKR
Ga0181359_100001168	F055673	N/A	MKIFKKFEENLEYLGFELAPVAWDLARFDFESDDDRLALLEELTAGREINTDGSMG