NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1000009

Scaffold Ga0181359_1000009


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1000009 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)42011
Total Scaffold Genes70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)64 (91.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000346Metagenome / Metatranscriptome1253Y
F046255Metagenome / Metatranscriptome151Y
F085600Metagenome / Metatranscriptome111Y
F093791Metagenome / Metatranscriptome106N
F103127Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100000910F093791AGGAMSEQDKTLGVLDRVLTYVDSPFKLIALLIMFVFGFCAWFVYANHDLLVGAYKESQKLPSINEARVEDAAAVLIKYGGAQTVSIFKVNPLFGTRVLYRAYTKDGRDKRLEGIDVGLFTTNQANNADVVKLMAGETPCGDYHKPQSEIGLWYVEVGVTYGCRISVPPDATRFIGQITVGFKDRPESIEDVQSLMSIASSMLTKKSY
Ga0181359_100000912F046255AGGAGMDDKKIELSLSLVNATLQYLGTRPYGEVFQLVQAIQEQAIPQVPMPETKPDEATVQ
Ga0181359_100000921F000346AGGAGMDKKDLKQDKKMIASAVHKHEAKMHPGKPMTKLAKGGVTSANMKKYGRNLARAMNQKSSTRGG
Ga0181359_100000931F085600AGGAGMAMQTDVKGVSCPASTDTTAYNGRTRLKGLYYSASAASSVAVKDGATTLFTFTIAAADSSYVILPGEGAVVQTSLVITVGANCTAVAFYG
Ga0181359_100000952F103127AGGAGMNTYRFECVVWVRGESAEQAFKELHDEVDYHFSQDNNLVALESDAGTLEETEVEE

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