Scaffold Ga0181359_1000009

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1000009
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 42011
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (91.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000346	Metagenome / Metatranscriptome	1253	Y
F046255	Metagenome / Metatranscriptome	151	Y
F085600	Metagenome / Metatranscriptome	111	Y
F093791	Metagenome / Metatranscriptome	106	N
F103127	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100000910	F093791	AGGA	MSEQDKTLGVLDRVLTYVDSPFKLIALLIMFVFGFCAWFVYANHDLLVGAYKESQKLPSINEARVEDAAAVLIKYGGAQTVSIFKVNPLFGTRVLYRAYTKDGRDKRLEGIDVGLFTTNQANNADVVKLMAGETPCGDYHKPQSEIGLWYVEVGVTYGCRISVPPDATRFIGQITVGFKDRPESIEDVQSLMSIASSMLTKKSY
Ga0181359_100000912	F046255	AGGAG	MDDKKIELSLSLVNATLQYLGTRPYGEVFQLVQAIQEQAIPQVPMPETKPDEATVQ
Ga0181359_100000921	F000346	AGGAG	MDKKDLKQDKKMIASAVHKHEAKMHPGKPMTKLAKGGVTSANMKKYGRNLARAMNQKSSTRGG
Ga0181359_100000931	F085600	AGGAG	MAMQTDVKGVSCPASTDTTAYNGRTRLKGLYYSASAASSVAVKDGATTLFTFTIAAADSSYVILPGEGAVVQTSLVITVGANCTAVAFYG
Ga0181359_100000952	F103127	AGGAG	MNTYRFECVVWVRGESAEQAFKELHDEVDYHFSQDNNLVALESDAGTLEETEVEE