Basic Information | |
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Family ID | F103127 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 101 |
Average Sequence Length | 55 residues |
Representative Sequence | MNTYRFECVVWVRGETPEEALKELHDEVDYHFSQDNNLIALESDEGKLCEENQQ |
Number of Associated Samples | 67 |
Number of Associated Scaffolds | 101 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 93.07 % |
% of genes near scaffold ends (potentially truncated) | 10.89 % |
% of genes from short scaffolds (< 2000 bps) | 82.18 % |
Associated GOLD sequencing projects | 58 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.49 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (59.406 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (35.644 % of family members) |
Environment Ontology (ENVO) | Unclassified (46.535 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (47.525 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 20.73% β-sheet: 9.76% Coil/Unstructured: 69.51% | Feature Viewer |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.49 |
Powered by PDBe Molstar |
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Pfam ID | Name | % Frequency in 101 Family Scaffolds |
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PF10765 | Phage_P22_NinX | 13.86 |
PF13443 | HTH_26 | 1.98 |
PF13362 | Toprim_3 | 0.99 |
PF13662 | Toprim_4 | 0.99 |
PF08484 | Methyltransf_14 | 0.99 |
PF13519 | VWA_2 | 0.99 |
PF04851 | ResIII | 0.99 |
PF03237 | Terminase_6N | 0.99 |
PF00271 | Helicase_C | 0.99 |
PF02767 | DNA_pol3_beta_2 | 0.99 |
PF01726 | LexA_DNA_bind | 0.99 |
COG ID | Name | Functional Category | % Frequency in 101 Family Scaffolds |
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COG0592 | DNA polymerase III sliding clamp (beta) subunit, PCNA homolog | Replication, recombination and repair [L] | 0.99 |
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Name | Rank | Taxonomy | Distribution |
Unclassified | root | N/A | 59.41 % |
All Organisms | root | All Organisms | 40.59 % |
Visualization |
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Scaffold | Taxonomy | Length | IMG/M Link |
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2022920000|QLn_FPQQ8XI07LZGJL | Not Available | 501 | Open in IMG/M |
3300001589|JGI24005J15628_10132748 | Not Available | 783 | Open in IMG/M |
3300001850|RCM37_1198226 | Not Available | 645 | Open in IMG/M |
3300004240|Ga0007787_10241316 | All Organisms → cellular organisms → Bacteria | 886 | Open in IMG/M |
3300005581|Ga0049081_10227277 | Not Available | 661 | Open in IMG/M |
3300005805|Ga0079957_1006309 | Not Available | 9511 | Open in IMG/M |
3300005805|Ga0079957_1239471 | Not Available | 849 | Open in IMG/M |
3300006030|Ga0075470_10003865 | Not Available | 4637 | Open in IMG/M |
3300006641|Ga0075471_10122267 | All Organisms → Viruses → Predicted Viral | 1388 | Open in IMG/M |
3300006734|Ga0098073_1044221 | Not Available | 603 | Open in IMG/M |
3300006802|Ga0070749_10065872 | All Organisms → Viruses → Predicted Viral | 2180 | Open in IMG/M |
3300006802|Ga0070749_10091858 | Not Available | 1802 | Open in IMG/M |
3300006802|Ga0070749_10140534 | All Organisms → Viruses → Predicted Viral | 1409 | Open in IMG/M |
3300006802|Ga0070749_10335659 | Not Available | 842 | Open in IMG/M |
3300006802|Ga0070749_10439725 | Not Available | 716 | Open in IMG/M |
3300007212|Ga0103958_1098540 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 2165 | Open in IMG/M |
3300007346|Ga0070753_1057957 | All Organisms → Viruses → Predicted Viral | 1574 | Open in IMG/M |
3300007363|Ga0075458_10005704 | All Organisms → Viruses → Predicted Viral | 4023 | Open in IMG/M |
3300007538|Ga0099851_1035402 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1990 | Open in IMG/M |
3300007538|Ga0099851_1046857 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1702 | Open in IMG/M |
3300007539|Ga0099849_1092543 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei | 1211 | Open in IMG/M |
3300007539|Ga0099849_1106676 | All Organisms → Viruses → Predicted Viral | 1112 | Open in IMG/M |
3300007540|Ga0099847_1184589 | Not Available | 612 | Open in IMG/M |
3300007541|Ga0099848_1178038 | Not Available | 773 | Open in IMG/M |
3300007541|Ga0099848_1183132 | Not Available | 759 | Open in IMG/M |
3300007541|Ga0099848_1289182 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 565 | Open in IMG/M |
3300007541|Ga0099848_1297795 | Not Available | 554 | Open in IMG/M |
3300007542|Ga0099846_1049358 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1597 | Open in IMG/M |
3300007542|Ga0099846_1139854 | Not Available | 875 | Open in IMG/M |
3300007609|Ga0102945_1001863 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter → unclassified Polynucleobacter → Polynucleobacter sp. UK-Gri1-W3 | 5960 | Open in IMG/M |
3300007640|Ga0070751_1283309 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 621 | Open in IMG/M |
3300007960|Ga0099850_1096755 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei | 1222 | Open in IMG/M |
3300007960|Ga0099850_1197792 | Not Available | 792 | Open in IMG/M |
3300007960|Ga0099850_1210495 | Not Available | 762 | Open in IMG/M |
3300009151|Ga0114962_10209698 | All Organisms → Viruses → Predicted Viral | 1133 | Open in IMG/M |
3300009165|Ga0105102_10104685 | All Organisms → Viruses → Predicted Viral | 1333 | Open in IMG/M |
3300009529|Ga0114919_10342683 | All Organisms → Viruses → Predicted Viral | 1044 | Open in IMG/M |
3300010297|Ga0129345_1106269 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1037 | Open in IMG/M |
3300010299|Ga0129342_1162806 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei | 807 | Open in IMG/M |
3300010299|Ga0129342_1247158 | Not Available | 622 | Open in IMG/M |
3300010299|Ga0129342_1251266 | Not Available | 616 | Open in IMG/M |
3300010354|Ga0129333_10213155 | All Organisms → Viruses → Predicted Viral | 1753 | Open in IMG/M |
3300010354|Ga0129333_10269564 | Not Available | 1530 | Open in IMG/M |
3300010370|Ga0129336_10642404 | Not Available | 564 | Open in IMG/M |
(restricted) 3300013126|Ga0172367_10357215 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter → unclassified Polynucleobacter → Polynucleobacter sp. JS-Safj-400b-B2 | 841 | Open in IMG/M |
(restricted) 3300013126|Ga0172367_10480210 | Not Available | 686 | Open in IMG/M |
(restricted) 3300013127|Ga0172365_10014851 | All Organisms → Viruses | 5629 | Open in IMG/M |
(restricted) 3300013128|Ga0172366_10649044 | Not Available | 622 | Open in IMG/M |
(restricted) 3300013130|Ga0172363_10022545 | All Organisms → Viruses | 4821 | Open in IMG/M |
(restricted) 3300013131|Ga0172373_10084640 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 2475 | Open in IMG/M |
(restricted) 3300013132|Ga0172372_10131466 | Not Available | 2026 | Open in IMG/M |
(restricted) 3300013132|Ga0172372_10693763 | Not Available | 644 | Open in IMG/M |
(restricted) 3300013137|Ga0172375_10890027 | Not Available | 539 | Open in IMG/M |
(restricted) 3300014720|Ga0172376_10736831 | Not Available | 530 | Open in IMG/M |
3300015050|Ga0181338_1053373 | Not Available | 587 | Open in IMG/M |
3300017747|Ga0181352_1079674 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 917 | Open in IMG/M |
3300017747|Ga0181352_1131682 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium | 670 | Open in IMG/M |
3300017747|Ga0181352_1156800 | Not Available | 600 | Open in IMG/M |
3300017754|Ga0181344_1027959 | All Organisms → Viruses → Predicted Viral | 1729 | Open in IMG/M |
3300017754|Ga0181344_1098284 | Not Available | 851 | Open in IMG/M |
3300017754|Ga0181344_1107973 | Not Available | 806 | Open in IMG/M |
3300017754|Ga0181344_1135714 | Not Available | 705 | Open in IMG/M |
3300017991|Ga0180434_10018266 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 7007 | Open in IMG/M |
3300018080|Ga0180433_10155506 | Not Available | 1901 | Open in IMG/M |
3300019098|Ga0188859_1011944 | Not Available | 514 | Open in IMG/M |
3300019784|Ga0181359_1000009 | Not Available | 42011 | Open in IMG/M |
3300019784|Ga0181359_1003744 | All Organisms → Viruses → Predicted Viral | 4722 | Open in IMG/M |
3300020159|Ga0211734_10774848 | Not Available | 12589 | Open in IMG/M |
3300020159|Ga0211734_11126293 | Not Available | 763 | Open in IMG/M |
3300021962|Ga0222713_10444463 | Not Available | 788 | Open in IMG/M |
3300022179|Ga0181353_1084701 | Not Available | 796 | Open in IMG/M |
3300022179|Ga0181353_1119335 | Not Available | 632 | Open in IMG/M |
3300022179|Ga0181353_1123513 | Not Available | 617 | Open in IMG/M |
3300022198|Ga0196905_1122245 | Not Available | 682 | Open in IMG/M |
3300022198|Ga0196905_1168071 | Not Available | 559 | Open in IMG/M |
3300022200|Ga0196901_1105108 | All Organisms → Viruses | 981 | Open in IMG/M |
3300022200|Ga0196901_1144478 | Not Available | 797 | Open in IMG/M |
3300022200|Ga0196901_1273828 | Not Available | 516 | Open in IMG/M |
3300022407|Ga0181351_1075760 | All Organisms → Viruses → Predicted Viral | 1352 | Open in IMG/M |
3300022407|Ga0181351_1087487 | All Organisms → Viruses → Predicted Viral | 1229 | Open in IMG/M |
3300022407|Ga0181351_1179276 | Not Available | 731 | Open in IMG/M |
3300023179|Ga0214923_10375776 | Not Available | 739 | Open in IMG/M |
3300025138|Ga0209634_1172427 | Not Available | 858 | Open in IMG/M |
3300025445|Ga0208424_1001811 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 2389 | Open in IMG/M |
3300025655|Ga0208795_1175027 | Not Available | 519 | Open in IMG/M |
3300025674|Ga0208162_1177374 | Not Available | 560 | Open in IMG/M |
3300025687|Ga0208019_1175413 | Not Available | 582 | Open in IMG/M |
3300025687|Ga0208019_1185170 | Not Available | 557 | Open in IMG/M |
3300025889|Ga0208644_1049597 | All Organisms → Viruses → Predicted Viral | 2339 | Open in IMG/M |
3300025889|Ga0208644_1281191 | Not Available | 671 | Open in IMG/M |
3300026097|Ga0209953_1007915 | Not Available | 2305 | Open in IMG/M |
3300027302|Ga0255096_1025939 | All Organisms → Viruses → Predicted Viral | 1292 | Open in IMG/M |
3300027693|Ga0209704_1122032 | Not Available | 748 | Open in IMG/M |
3300027708|Ga0209188_1005050 | Not Available | 8579 | Open in IMG/M |
3300031539|Ga0307380_11431005 | Not Available | 519 | Open in IMG/M |
3300031578|Ga0307376_10213797 | All Organisms → Viruses → Predicted Viral | 1312 | Open in IMG/M |
3300031951|Ga0315904_11095028 | Not Available | 622 | Open in IMG/M |
3300033488|Ga0316621_11144732 | Not Available | 586 | Open in IMG/M |
3300034101|Ga0335027_0201389 | All Organisms → Viruses → Predicted Viral | 1414 | Open in IMG/M |
3300034104|Ga0335031_0640260 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 621 | Open in IMG/M |
3300034118|Ga0335053_0547532 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 674 | Open in IMG/M |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Habitat | Taxonomy | Distribution |
Aqueous | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous | 35.64% |
Freshwater Lake | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake | 17.82% |
Freshwater | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater | 10.89% |
Freshwater To Marine Saline Gradient | Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient | 6.93% |
Sediment | Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment | 2.97% |
Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 2.97% |
Freshwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment | 1.98% |
Freshwater Lake | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake | 1.98% |
Freshwater | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater | 1.98% |
Lake | Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake | 1.98% |
Pond Water | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water | 1.98% |
Hypersaline Lake Sediment | Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment | 1.98% |
Soil | Environmental → Terrestrial → Soil → Clay → Unclassified → Soil | 1.98% |
Freshwater Lentic | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic | 0.99% |
Freshwater Lake | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake | 0.99% |
Marine Plankton | Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton | 0.99% |
Freshwater | Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater | 0.99% |
Freshwater | Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater | 0.99% |
Deep Subsurface | Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface | 0.99% |
Estuarine Water | Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water | 0.99% |
Saline Water | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water | 0.99% |
Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 0.99% |
Visualization |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Taxon OID | Sample Name | Habitat Type | IMG/M Link |
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2022920000 | Saline water microbial communities from Qinghai Lake, Tibetan Plateau - High mountain lake (unassembled) | Environmental | Open in IMG/M |
3300001589 | Marine viral communities from the Pacific Ocean - LP-40 | Environmental | Open in IMG/M |
3300001850 | Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM37, ROCA_DNA234_0.2um_Ob_C_2a | Environmental | Open in IMG/M |
3300004240 | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN | Environmental | Open in IMG/M |
3300005581 | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF | Environmental | Open in IMG/M |
3300005805 | Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA | Environmental | Open in IMG/M |
3300006030 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA | Environmental | Open in IMG/M |
3300006641 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA | Environmental | Open in IMG/M |
3300006734 | Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG | Environmental | Open in IMG/M |
3300006802 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 | Environmental | Open in IMG/M |
3300007212 | Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Bottom layer) 7 sequencing projects | Environmental | Open in IMG/M |
3300007346 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 | Environmental | Open in IMG/M |
3300007363 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA | Environmental | Open in IMG/M |
3300007538 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG | Environmental | Open in IMG/M |
3300007539 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG | Environmental | Open in IMG/M |
3300007540 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG | Environmental | Open in IMG/M |
3300007541 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG | Environmental | Open in IMG/M |
3300007542 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG | Environmental | Open in IMG/M |
3300007609 | Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG | Environmental | Open in IMG/M |
3300007640 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 | Environmental | Open in IMG/M |
3300007960 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG | Environmental | Open in IMG/M |
3300009151 | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG | Environmental | Open in IMG/M |
3300009165 | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 | Environmental | Open in IMG/M |
3300009529 | Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG | Environmental | Open in IMG/M |
3300010297 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNA | Environmental | Open in IMG/M |
3300010299 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNA | Environmental | Open in IMG/M |
3300010354 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA | Environmental | Open in IMG/M |
3300010370 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNA | Environmental | Open in IMG/M |
3300013126 (restricted) | Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m | Environmental | Open in IMG/M |
3300013127 (restricted) | Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 48cm | Environmental | Open in IMG/M |
3300013128 (restricted) | Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 69cm | Environmental | Open in IMG/M |
3300013130 (restricted) | Sediment microbial communities from Lake Kivu, Rwanda - Sediment s2_kivu2a2 | Environmental | Open in IMG/M |
3300013131 (restricted) | Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10m | Environmental | Open in IMG/M |
3300013132 (restricted) | Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5m | Environmental | Open in IMG/M |
3300013137 (restricted) | Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_11.1m | Environmental | Open in IMG/M |
3300014720 (restricted) | Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_35m | Environmental | Open in IMG/M |
3300015050 | Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.D | Environmental | Open in IMG/M |
3300017747 | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N | Environmental | Open in IMG/M |
3300017754 | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D | Environmental | Open in IMG/M |
3300017991 | Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_2 metaG | Environmental | Open in IMG/M |
3300018080 | Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaG | Environmental | Open in IMG/M |
3300019098 | Metatranscriptome of marine microbial communities from Baltic Sea - GS684_0p1 | Environmental | Open in IMG/M |
3300019784 | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D | Environmental | Open in IMG/M |
3300020159 | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1 | Environmental | Open in IMG/M |
3300021962 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D | Environmental | Open in IMG/M |
3300022179 | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N | Environmental | Open in IMG/M |
3300022198 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3) | Environmental | Open in IMG/M |
3300022200 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3) | Environmental | Open in IMG/M |
3300022407 | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D | Environmental | Open in IMG/M |
3300023179 | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510 | Environmental | Open in IMG/M |
3300025138 | Marine viral communities from the Pacific Ocean - LP-40 (SPAdes) | Environmental | Open in IMG/M |
3300025445 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
3300025655 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes) | Environmental | Open in IMG/M |
3300025674 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes) | Environmental | Open in IMG/M |
3300025687 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes) | Environmental | Open in IMG/M |
3300025889 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes) | Environmental | Open in IMG/M |
3300026097 | Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG (SPAdes) | Environmental | Open in IMG/M |
3300027302 | Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepA_8d | Environmental | Open in IMG/M |
3300027693 | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 (SPAdes) | Environmental | Open in IMG/M |
3300027708 | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes) | Environmental | Open in IMG/M |
3300031539 | Soil microbial communities from Risofladan, Vaasa, Finland - UN-3 | Environmental | Open in IMG/M |
3300031578 | Soil microbial communities from Risofladan, Vaasa, Finland - TR-2 | Environmental | Open in IMG/M |
3300031951 | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120 | Environmental | Open in IMG/M |
3300033488 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D1_C | Environmental | Open in IMG/M |
3300034101 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107 | Environmental | Open in IMG/M |
3300034104 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120 | Environmental | Open in IMG/M |
3300034118 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Aug2017-rr0165 | Environmental | Open in IMG/M |
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
QL_na_7116260 | 2022920000 | Saline Water | MNTYKFNCVVWVQGETQADALKELHDEVLYHFSMDNNLIALESDDGELVEESKQ |
JGI24005J15628_101327482 | 3300001589 | Marine | MNFYKFNCNVWVRGETAADALNELHEEVDYLFKQDNNLIALESDKGVKVEEDA* |
RCM37_11982263 | 3300001850 | Marine Plankton | ECQVWVRGESAEAALKELHDEIEYHFSQDNNLIALESDGGTLVEEEQS* |
Ga0007787_102413162 | 3300004240 | Freshwater Lake | MNTYRFECVVWVRGESAEQAFKELHDEVDYHFSQDNNLVALESDAGTLEETEVEE* |
Ga0049081_102272773 | 3300005581 | Freshwater Lentic | MKVYKFQCTVWVRGESAEAACNELHDEVDYWFSQDNNLVALESDQGTEEVEE* |
Ga0079957_10063095 | 3300005805 | Lake | MNLYRFECTVWVRGNSLEEAQKELHDEVQYHFGLDNNLVSLESNEGELAEDE* |
Ga0079957_12394713 | 3300005805 | Lake | MNLYKFECTVWVQGTSAADAEKHLHDEVDYHFGQDNNLIALESQPPQLVDQVLSLRP* |
Ga0075470_100038659 | 3300006030 | Aqueous | MNLYKFTCSVWVRGESLEAALQELHEEVDYHFGLDNNLIALESDEGVLAEEGESK* |
Ga0075471_101222671 | 3300006641 | Aqueous | NLYKFTCSVWVRGESLEAALQELHEEVDYHFGLDNNLIALESDEGVLAEEGESK* |
Ga0098073_10442212 | 3300006734 | Marine | MNVYAFNCTVWVRGETKEDALKELHDEVEYHFGLDNNLVALESDEGKLVEGEC* |
Ga0070749_100658723 | 3300006802 | Aqueous | MKMKTYEFKCTVWVRGETREDALKELQDEVEYHFGLDNNLMALMSDEGKLVEEEAHVPSA |
Ga0070749_100918584 | 3300006802 | Aqueous | MNVYAFNCTVWVQGETKEDALKELHDEVEYHFSLDNNLVALESDEGKLVEGEL* |
Ga0070749_101405343 | 3300006802 | Aqueous | MNVYAFNCTVWVRGETKEDALKELHDEVEYHFGLDNNLVALESDEGKIVEGETA* |
Ga0070749_103356592 | 3300006802 | Aqueous | MNVYRFKCTVWVAGDSAEEALKHLHEEVEYHFGQDNSLIALESDEGVIDETYGD* |
Ga0070749_104397253 | 3300006802 | Aqueous | MNLYAFNCTVWVQGETKEDALKELHDEVEYNFGLDNNLVALESDEGKLVEEETA* |
Ga0103958_10985408 | 3300007212 | Freshwater Lake | MNVYRFECVVWVRGETLEEAQKELHDEVKYYFSQDNNLIALESDAGKLDEEGVHDE* |
Ga0070753_10579573 | 3300007346 | Aqueous | MNVYAFNCTVWVQGETKEDALKELHDEVEYNFGLDNNLVALESDEGKLVEEETA* |
Ga0075458_100057046 | 3300007363 | Aqueous | MNLYKFECVVLVRGESAEDALKELHDEVDYHFSLDNNLIALESDAGALIEEGESERITV* |
Ga0099851_10354024 | 3300007538 | Aqueous | MNTYQFECVVWVRGETLEGALKELHDEVDYLFSLDNNLIALESDKGQLCEEGST* |
Ga0099851_10468576 | 3300007538 | Aqueous | MNTYRFECVVWVRGETPEEALKELHDEVKYHFSQDNNLIALESDEGELCEENQQ* |
Ga0099849_10925433 | 3300007539 | Aqueous | MGDLRMNTYRFECVVWVRGETPEEALKELHDEVKYHFSQDNNLIALESDEGKLCEENQQ* |
Ga0099849_11066765 | 3300007539 | Aqueous | MNLYKFKCVVWVRGETPEEALKHLHEEVEYHFSQDNNLIALESDEGELCEEEK* |
Ga0099847_11845892 | 3300007540 | Aqueous | MNLYKFKCSVWVRGETPEEALKHLHEEVEYHFSQDNNLIALESDEGELCEENQQ* |
Ga0099848_11780382 | 3300007541 | Aqueous | MNVYAFNCTVWVRGETKEDALKELHDEVEYHFGLDNNLIALESDEGKLVEGEQV* |
Ga0099848_11831322 | 3300007541 | Aqueous | MNVYAFNCTVWVQGETKEDALKELHDEVEYHFGLDNNLVALESDEGKLVEGEC* |
Ga0099848_12891823 | 3300007541 | Aqueous | MNVYAFNCTVWVRGETKEDALKELHDEVEYHFGLDNNLVALESDGGKIVEGETA* |
Ga0099848_12977952 | 3300007541 | Aqueous | MNVYQFKCVVWVRGETPEEALKHLHDEVDYHFSQDNNLLALESDEGELCEEEK* |
Ga0099846_10493585 | 3300007542 | Aqueous | MGGVRKNTYRLGCGVWVRGEAPEEALKELHDEVKYHFSQDNNLIALESDEGELCEENQQ* |
Ga0099846_11398543 | 3300007542 | Aqueous | MNLYKFKCSVWVRGETPEEALKHLHEEVEYHFSQDNNLIALESDEGELCEEEK* |
Ga0102945_100186312 | 3300007609 | Pond Water | VQGESLTDALEQLHSEVQYHFGLDNNLVALESDQGELVEEAQDDTKD* |
Ga0070751_12833091 | 3300007640 | Aqueous | MNVYAFNCTVWVRGETKEDALKDLHDEVEYHFGLDNNLVALESDEGKIVEGEQV* |
Ga0099850_10967553 | 3300007960 | Aqueous | MNTYRFECVVWVRGETPEEALKELHDEVKYHFSQDNNLIALESDEGKLCEENQQ* |
Ga0099850_11977923 | 3300007960 | Aqueous | MNVYQFKCVVWVRGETPEEALKELHDEVDYHFSQDNNLLALESDEGELCEEEK* |
Ga0099850_12104951 | 3300007960 | Aqueous | MNVYAFNCTVWVQGETKEDALKELHDEVKYHFGLDNNLVALESDEGKLVEGEAA* |
Ga0114962_102096984 | 3300009151 | Freshwater Lake | MKVYKFQCTVWVRGESAESASKELHKEVEYHFGLDNNLLALESDNGEFVEEDQS* |
Ga0105102_101046853 | 3300009165 | Freshwater Sediment | MKKYKFNCAIWVRGEDAEQARKELHDEVDYWFALDNNLIALESDEGYEEDDDE* |
Ga0114919_103426833 | 3300009529 | Deep Subsurface | MNLYKFKCSVWVRGETPEEALKHLHEEVEYHFGQDNNLIALESDEGELCEEEK* |
Ga0129345_11062692 | 3300010297 | Freshwater To Marine Saline Gradient | MGDLRMNTYRFECVVWVRGETPEEALKELHDEVEYHFSQDNNLIALESDEGELCEENQQ* |
Ga0129342_11628061 | 3300010299 | Freshwater To Marine Saline Gradient | MNVYAFNCTVWVRGETKEDALKELHDEVEYHFGLDNNLVALESD |
Ga0129342_12471583 | 3300010299 | Freshwater To Marine Saline Gradient | MNVYAFNCTVWVRGETKEDALKELHDEVDYHFGLDNNLVALESDEGKIVEGETA* |
Ga0129342_12512663 | 3300010299 | Freshwater To Marine Saline Gradient | MGDLRMNTYRFECVVWVRGETPEEALKELHDEVKYHFSQDNNLIALESDEGE |
Ga0129333_102131555 | 3300010354 | Freshwater To Marine Saline Gradient | MNLYKFECVVWVRGDSAESALKELHNEVDYHFSLDNNLVALESDAGELVEEGESK* |
Ga0129333_102695645 | 3300010354 | Freshwater To Marine Saline Gradient | TGDQTMNLYKFECTVWVQGTSAEEALKELHDEVDYHFGQDNNLIALESGKPELVDQTLTKRA* |
Ga0129336_106424041 | 3300010370 | Freshwater To Marine Saline Gradient | MNLYKFECTVWVQGTSAEEALKELHDEVDYHFGQDNNLIALESGKPELVDQTLTKRA* |
(restricted) Ga0172367_103572151 | 3300013126 | Freshwater | MNIYRFECVVWVRGETLEEALKELHDEVEYHFSQDNNLIALESGAGKLDEEGV* |
(restricted) Ga0172367_104802102 | 3300013126 | Freshwater | MNVYRFECVVWVRGETPEEALKHLHDEVKYHFSQDNNLVALESDEGKLDEEESKND* |
(restricted) Ga0172365_100148516 | 3300013127 | Sediment | MNVYRFECVVWVRGETLEEALKHLHDEVKYHFSQDNNLVALESDEGKLDEEESKND* |
(restricted) Ga0172366_106490441 | 3300013128 | Sediment | MSNVYRFECVVWVRGETLEEALKHLHDEVKYHFSQDNNLVALESDEGKLDEEESKND* |
(restricted) Ga0172363_100225454 | 3300013130 | Sediment | MNVYRFECVVWVRGETPEEALKHLHDEVKYHFNQDNNLIALESDAGKLDEEEV* |
(restricted) Ga0172373_100846405 | 3300013131 | Freshwater | MNVYRFECVVWVRGETLEEALKHLHDEVKYHFNQDNNLIALESDAGKLDEEEV* |
(restricted) Ga0172372_101314666 | 3300013132 | Freshwater | MSNVYRFECVVWVRGETLEEALKHLHDEVKYNFSQDNNLVALESDEGKLDEEESKND* |
(restricted) Ga0172372_106937633 | 3300013132 | Freshwater | MNVYRFECVVWVRGETLEEAQKELHDEVKYHFSQDNNLIALESDAGKLDEEEV* |
(restricted) Ga0172375_108900272 | 3300013137 | Freshwater | MNVYRFECVVWVRGETLEEAQKELHDEVKYHFSQDNNLIALESDAGKLDEEEVHDE* |
(restricted) Ga0172376_107368312 | 3300014720 | Freshwater | MSNVYRFECVVWVRGETLEEALKHLHDEVKYHFSQDNNLVALESDEGKLDEEES |
Ga0181338_10533732 | 3300015050 | Freshwater Lake | VWVRGESAESASKELHEEVKYHFGLDNNLIALESDDGEFVEGETE* |
Ga0181352_10796742 | 3300017747 | Freshwater Lake | VNLYKFECVVWVQGESQEAALKELHDEADYHFAQDNNLIALQSDEGVFVEKMGEIE |
Ga0181352_11316822 | 3300017747 | Freshwater Lake | MNTYRFECVVWVRGESAEQAFKELHDEVEYHFSQDNNLVALESDAGTLEETEEQS |
Ga0181352_11568002 | 3300017747 | Freshwater Lake | VNLYRFNCNVWVRGESLEQALKELHEEVDYHFGLDNNLIALESDEGELVDGLYNTCNDE |
Ga0181344_10279594 | 3300017754 | Freshwater Lake | MNVYKFDCVVWVHGESAEDAFQELHAEADYFFGLDNNLIALGSDEGTLVEITEQGTLQ |
Ga0181344_10982843 | 3300017754 | Freshwater Lake | VNLYRFNCNVWVRGESLEQALKELHEEVDYHFGLDNNLIALESDEGELVDSENQEESK |
Ga0181344_11079732 | 3300017754 | Freshwater Lake | MNLYRFNCNVWVRGESLEEALKELHNEVDYHFGLDNNLIALESDEGELVDSQETIDVEEL |
Ga0181344_11357142 | 3300017754 | Freshwater Lake | MKVYKFNCNVLVRGESLEDALKELHDEVEYHFGHDNNLIALESDGGVLVENEDQGERA |
Ga0180434_100182665 | 3300017991 | Hypersaline Lake Sediment | MKTFEFKCTVWVQGETREDALKELHDEVDYHFGLDNNLVALESDEGKLVEEDS |
Ga0180433_101555061 | 3300018080 | Hypersaline Lake Sediment | MKTYEFKCTVWVRGETIEDALKELHDEVDYHFGLDNNLVALESDAGKLVEEDS |
Ga0188859_10119441 | 3300019098 | Freshwater Lake | MNTYRFECVVWVRGETPEEALKELHDEVDYHFSQDNNLIALESDEGKLCEENQQ |
Ga0181359_100000952 | 3300019784 | Freshwater Lake | MNTYRFECVVWVRGESAEQAFKELHDEVDYHFSQDNNLVALESDAGTLEETEVEE |
Ga0181359_10037447 | 3300019784 | Freshwater Lake | MNLYKFRCIVWVQGASAADALKELYEEVDYHFSLDNNLIALESDSGELVHEIKGEDQ |
Ga0211734_107748488 | 3300020159 | Freshwater | MNLYKFECTVWVQGTSAADAEKHLHDEVDYHFGQDNNLIALESGNAQLVDQTLTERT |
Ga0211734_111262933 | 3300020159 | Freshwater | MNLYKFECTVWVQGTTAADAEKHLHDEVDYHFGQDNNLIALQSGNAQLVDQTLTERT |
Ga0222713_104444632 | 3300021962 | Estuarine Water | MKVYKFQCIVWVHGESAEEALKELHEEADYFFGLDNNLIALSSDEGTLVNTEQGLLQ |
Ga0181353_10847013 | 3300022179 | Freshwater Lake | MNLYRFECTVWVRGNTLEEACKELHDEVQYHFGLDNNLVSLESNEGELAEDE |
Ga0181353_11193352 | 3300022179 | Freshwater Lake | MNTYRFECVVWVRGESAEQALKELHDEVEYHFSQDNNLVALESDAGTLEETEEQS |
Ga0181353_11235132 | 3300022179 | Freshwater Lake | MNLYRFECTVWVRGNTLEEACKELHDEVQYHFGQDNNLVALESNEGELAEDE |
Ga0196905_11222452 | 3300022198 | Aqueous | MNTYQFECVVWVRGETLEGALKELHDEVDYLFSLDNNLIALESDKGQLCEEGST |
Ga0196905_11680712 | 3300022198 | Aqueous | METFEFKCTVWVRGETREDALKELHDEVDYHFGLDNNLMALESDEGKLVEGEQR |
Ga0196901_11051083 | 3300022200 | Aqueous | MKTYEFKCTVWVRGETREDALKELHDEVEYHFGMDNNLVALESDEGKVKEENEDED |
Ga0196901_11444781 | 3300022200 | Aqueous | MNVYAFNCTVWVRGETKEDALKELHDEVEYHFGLDNNLVALESDEGKIVEGETA |
Ga0196901_12738281 | 3300022200 | Aqueous | MNVYAFNCTVWVQGETKEDALKELHDEVEYHFGLDNNLVALESDEGKLVEGEC |
Ga0181351_10757604 | 3300022407 | Freshwater Lake | MKTYKFQCTVWVQGESAEEARKELHNEVQYHFGLDNNLIALESDAGEFVETEGESK |
Ga0181351_10874871 | 3300022407 | Freshwater Lake | RKQMNVYKFQCIVWVHGESAEEALKELHEEADYFFGLDNNLIALGSDEGTLVETDKEMLQ |
Ga0181351_11792761 | 3300022407 | Freshwater Lake | MNTYRFQCTVWVRGENAESALKELHDEVDYHFAQDNNLVALESDNGTLDEERIEK |
Ga0214923_103757762 | 3300023179 | Freshwater | MNLYRFECTVWVRGNTLDEAQKELHDEVLYHFGQDNNLVALESNEGELAEDDTDL |
Ga0209634_11724273 | 3300025138 | Marine | MNFYKFNCNVWVRGETAADALNELHEEVDYLFKQDNNLIALESDKGVKVEEDA |
Ga0208424_10018117 | 3300025445 | Aqueous | MNLYKFTCSVWVRGESLEAALQELHEEVDYHFGLDNNLIALESDEGVLAEEGESK |
Ga0208795_11750271 | 3300025655 | Aqueous | MNTYRFECVVWVRGETPEEALKELHDEVKYHFSQDNNLIALESDEGKLCEE |
Ga0208162_11773741 | 3300025674 | Aqueous | MNTYRFECVVWVRGETPEEALKELHDEVKYHFSQDNNLIALESDEGKL |
Ga0208019_11754131 | 3300025687 | Aqueous | MNVYAFNCTVWVQGETKEDALKELHDEVKYHFGLDNNLVALESDEGKLVEGEAA |
Ga0208019_11851703 | 3300025687 | Aqueous | MNTYRFECVVWVRGETPEEALKELHDEVKYHFSQDNNLIALESDEGKLCEENQQ |
Ga0208644_10495977 | 3300025889 | Aqueous | MKTYEFKCTVWVRGETREDALKELQDEVEYHFGLDNNLMALMSDEGKLVEEEAHVPSA |
Ga0208644_12811912 | 3300025889 | Aqueous | MNLYAFNCTVWVQGETKEDALKELHDEVEYNFGLDNNLVALESDEGKLVEEETA |
Ga0209953_10079152 | 3300026097 | Pond Water | MKTYKFRCDVWVQGESLTDALEQLHSEVQYHFGLDNNLVALESDQGELVEEAQDDTKD |
Ga0255096_10259394 | 3300027302 | Freshwater | MNLYRFECVVWVRGESAEDALKELHDEVDYHFSLDNNLIALESDAGELVEEGESK |
Ga0209704_11220322 | 3300027693 | Freshwater Sediment | MKKYKFNCAIWVRGEDAEQARKELHDEVDYWFALDNNLIALESDEGYEEDDD |
Ga0209188_100505021 | 3300027708 | Freshwater Lake | MKVYKFQCTVWVRGESAESASKELHKEVEYHFGLDNNLLALESDNGEFVEEDQS |
Ga0307380_114310052 | 3300031539 | Soil | MNTYRFECVVWVRGETPEEALKELHDEVDYHFSQDNNLIALESDEGELCEENQQ |
Ga0307376_102137974 | 3300031578 | Soil | MNVYQFKCVVWVRGETPEEALKHLHDEVEYHFSQDNNLIALESDEGELCEEEK |
Ga0315904_110950282 | 3300031951 | Freshwater | MNLYKFQCTIWVRGTSPADAEKHLHDEVDYHFGQDNNLIALESGEPELVDQTLTERT |
Ga0316621_111447322 | 3300033488 | Soil | MSVYKFQCTVWVSGETREAALKELHDEVEYHFSLDNNLIALESDDGELVEQGESK |
Ga0335027_0201389_970_1152 | 3300034101 | Freshwater | MMNVYKFECTVWVRGESREAALKELHDEVDYHFGLDNNLIALESDEGALVEEETNQGESK |
Ga0335031_0640260_349_495 | 3300034104 | Freshwater | VHGDSAEEAMQELHNEADYFFGLDNNLIALASDEGTLVETDTEQGTLQ |
Ga0335053_0547532_3_170 | 3300034118 | Freshwater | MNLYKFQCTIWVRGTSPADAEKHLHDEVDYHFGQDNNLIALESGEPELVDQTLTER |
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