NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181360_112756

Scaffold Ga0181360_112756


Overview

Basic Information
Taxon OID3300019781 Open in IMG/M
Scaffold IDGa0181360_112756 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Sp13.ND.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)696
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019438Metagenome229Y
F059768Metagenome / Metatranscriptome133Y
F093280Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0181360_1127562F059768GGGGGMTLQEYVLALPEAERVKFLRAMVAVVDAGRKAGVPPEELAKMYADTYKHIEVKA
Ga0181360_1127563F093280AGGAMKKETEALIKASGCADVGELFDRSIRLGSFLHQFKQEHGRPMNPTEMKYLEAVVHATPPGDK
Ga0181360_1127564F019438N/AMDTVLTTILLGFIGVVVAGLVLVALMRLWFWMDEQERNDR

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