Scaffold Ga0197853_1041513

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0197853_1041513

Scaffold Ga0197853_1041513

Overview

Basic Information
Taxon OID	3300019775 Open in IMG/M
Scaffold ID	Ga0197853_1041513 Open in IMG/M
Source Dataset Name	Lab enriched sediment microbial communities from hydrocarbon-contaminated retail site, Toronto, Canada - S1, HI.1247_001
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Genome Quebec
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	51391
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (72.88%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Enriched Sediment → Metagenomes From Benzene-Degrading Nitrate-Reducing Cultures

Source Dataset Sampling Location
Location Name	Toronto, ON, Canada
Coordinates	Lat. (^o)	43.6532	Long. (^o)	-79.3832	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F080249	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0197853_104151345	F080249	GAGG	MADDKKKVGRQDDNLIAFKQRYEFDYAAKQLQKQVVGATRQEAKEALTKAAKKVSPSEGREKVMREARKILRD

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