NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193960_1206807

Scaffold Ga0193960_1206807


Overview

Basic Information
Taxon OID3300019768 Open in IMG/M
Scaffold IDGa0193960_1206807 Open in IMG/M
Source Dataset NameMicrobial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_3_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)502
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1644Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008795Metagenome328N
F064509Metagenome128N

Sequences

Protein IDFamilyRBSSequence
Ga0193960_12068071F064509N/AKTNIYGDYRICCKCGMKADVIENGNDSCASCYFKHHTNTTIEENEKRNKEIDIERERKRNEKS
Ga0193960_12068072F008795N/AMKKVKLESNEIELALNVAAKRFIGNVKMGKGFSYGYQGDYKKQLGDSFLGALGEVAYAKSSNSFYNGSYTDNLERYNDSDFQNNIEIRTQEKKIIIFYXLDLVRRKED

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