NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194029_1003867

Scaffold Ga0194029_1003867


Overview

Basic Information
Taxon OID3300019751 Open in IMG/M
Scaffold IDGa0194029_1003867 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1974
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017422Metagenome / Metatranscriptome241N
F101188Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0194029_10038672F101188N/AMEQSQDYKGWFWDDVNQKMYRWHDLQLLMQERELKKQKENGRQK
Ga0194029_10038674F017422N/AMNLTLEKVEPIPENGKRIADFLSEHFWAEHSLSGEGSPPIEWGRASSHINHFLFNGIVYNVLDGDTIIGSIAAGPDDYWWSAEQYIGDGWFYVLPKYRNLKDQIPPSHLLIDAVIDYAKEQDKPLILGIFNLEGVERAKKLFDKK

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