Scaffold Ga0194000_1001343

Overview

Basic Information

• Taxon OID: 3300019750
• Scaffold ID: Ga0194000_1001343
• Source Dataset Name: Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FLT_6-7_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2241
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034891	Metagenome	173	Y
F041819	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194000_10013431	F041819	N/A	EEAQLRVKAMELQAKYGAQVNIAELNAIMERDREALRQSAKDQAQGLFTGNVPPTQNI
Ga0194000_10013437	F034891	AGGAG	MPKVGKKHYSYTKKGIAMAKAAAKKAGKKVSYKKK