Scaffold Ga0193980_1058853

Overview

Basic Information

• Taxon OID: 3300019725
• Scaffold ID: Ga0193980_1058853
• Source Dataset Name: Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BLT_1-2_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 529
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC204P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060808	Metagenome / Metatranscriptome	132	N
F064091	Metagenome	129	N
F077796	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193980_10588531	F060808	GAG	MAIDFDALDLVRTENKAKRHEAIKQQQREQKEKDIKYFMNQLSSIKRDHDLCNDPAVKKLLLDK
Ga0193980_10588532	F077796	GAG	MENQISCDNCDFLENESELIETFDNELLCSPCYIKKEFNTESEE
Ga0193980_10588533	F064091	GAG	MTEYQKLESLHWGLDELIQGNELTDHELKTLQSFVEDIREKYLTESEK