Scaffold Ga0184646_1193467

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0184646_1193467

Scaffold Ga0184646_1193467

Overview

Basic Information
Taxon OID	3300019259 Open in IMG/M
Scaffold ID	Ga0184646_1193467 Open in IMG/M
Source Dataset Name	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	851
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9195	Long. (^o)	-106.9496	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062596	Metagenome / Metatranscriptome	130	Y
F088484	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184646_11934671	F088484	AGGAG	MDEQTYEYWQVLHRCVALGETLTTAEQVVYESGCQEMDAEERLDGNLERLRELRAQIAAAETEQQHLKAREAELDARIVALEARLDTRTRQLLGISN
Ga0184646_11934672	F062596	N/A	MTQLTIEIPDALARCLAWLASEQKKSVEQVAVEQRESLLEPAAEHLAEKYERFSQQSGLFVERLAEEKPHYQAVSEARLKELASLHHRSNLWGSAVGASSMGKAL

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.