Scaffold Ga0184643_1010922

Overview

Basic Information

• Taxon OID: 3300019255
• Scaffold ID: Ga0184643_1010922
• Source Dataset Name: Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 871
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F001079	Metagenome / Metatranscriptome	785	Y
F007262	Metagenome / Metatranscriptome	354	Y
F066970	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184643_10109221	F007262	N/A	ILWWLWQYRSTRQRGIYPTDQFGGYTSEAAGPATRFFLLFTVLVTGWAVVLIVGHLVWGQKF
Ga0184643_10109222	F001079	AGAAG	MAATEAAVPSVLPYVSWSSLTIAAIPADAWPGVFASMQALKGHVQEYPGCQKLEAFVHAEAEGAVRIHCYTTWDTPEQLEAFLERGYTFERMLHDVAGITAQPTLVMEKIF
Ga0184643_10109223	F000280	GGAG	MAAQEPDRPPAPARPLAGYRDVGEDVRHSRRSMIRAWIILAVLMAFYLGWTLVVFFLEPGLR
Ga0184643_10109224	F066970	AGG	VYVKHLTSLQFLTYVAFFTVVLAAMFKFVPGKAPPVRTEPYSEDELGAH