Scaffold Ga0179934_1106825

Overview

Basic Information

• Taxon OID: 3300019226
• Scaffold ID: Ga0179934_1106825
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA ? AD_UKC055_MetaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 868
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Illinois
• Coordinates
  • Lat. (^o): 41.53
  • Long. (^o): -90.43
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065813	Metagenome / Metatranscriptome	127	N
F073596	Metagenome / Metatranscriptome	120	N
F095525	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0179934_11068252	F095525	N/A	MKALTDIGLVAFGLVVGVVVGQLLQYNKHRIENFINKLKKKYYERI
Ga0179934_11068253	F073596	N/A	MNVFEKIKLWFTSISKVVNFLINTYKDAEVLADKKANFKTWADFVIAFIKDALQYADEIAALAQSQPVQTKGQVIKAVKQDKVISTNFKTAYFKEKAKKL
Ga0179934_11068254	F065813	N/A	MTPLISFFGWFDIIIATPFAIYLGYKIIKWIIGKLKKQPQEGEIDTPDVES