Scaffold Ga0184587_121301

Overview

Basic Information

• Taxon OID: 3300019185
• Scaffold ID: Ga0184587_121301
• Source Dataset Name: Soil microbial communities from Bohemian Forest, Czech Republic ? CSE2 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 652
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_57_6 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.044
  • Long. (^o): 13.617

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000173	Metagenome / Metatranscriptome	1777	Y
F001983	Metagenome / Metatranscriptome	608	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184587_1213011	F000173	GGAGG	MKTFEVQFRYRDRNEETVESTVKVDASSLPGGVAKATREFVKGLDRKQRFDMNKNGLEITAKTAGTATPTKASAETAAS
Ga0184587_1213012	F001983	AGGA	MTRKSTLASLVVAVVLSLSLTACKDTKTLQENEQLKTQVADLQKQNGEMGNNLESVTAARDALMKENDALQAEINTLKTKKHKTKASRRKRRQS