Scaffold Ga0187843_10026021

Overview

Basic Information

• Taxon OID: 3300019093
• Scaffold ID: Ga0187843_10026021
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_43
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2982
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005705	Metagenome / Metatranscriptome	392	Y
F010227	Metagenome / Metatranscriptome	306	Y
F010760	Metagenome / Metatranscriptome	299	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187843_1002602110	F010227	GGAG	MQATQFNVSNKLTLANTDTDEDIISTTYDCNVEVQLAGDSAWDCEIEAVTVTSIHIHESFDEDGDSSIHITVCYNVDGDAEYEGSWRLYTDSGFEEAISELLGTTVFFTEQGMQEDGYASME
Ga0187843_100260212	F005705	AGGAG	MKIVIKVPKQVRAHIVLFCKDTPFKQKVVQSKVKFKRNPKHKGREQ
Ga0187843_100260218	F010760	AGGAG	MLNIDKIVKVYNGKIGCMCGCNGKYSYTAKGAVENSPGYDVTDSINERSVRIITKKILSNPLVKFEDNYAYVEDRARNKMQMVVFKEPQEVFSPFDTVNS