Scaffold Ga0188856_1000069

Overview

Basic Information

• Taxon OID: 3300019076
• Scaffold ID: Ga0188856_1000069
• Source Dataset Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS683_0p8
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1529
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 54.570232
  • Long. (^o): 11.332183
  • Depth (m): .3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F004988	Metagenome / Metatranscriptome	416	Y
F090883	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0188856_10000694	F000720	GAGG	MTLQDDKIMRHKIPNRMMSATFTLPIDDRKVVGIVNYIATEEGIIPMALWVKIKPTDSYIDRELRASGKLISRCLQHGEDLKELAETLSQDNIIGQMVHYFVKNIEEIITGVQPNKKQRMLSTDPYAAQMKE
Ga0188856_10000695	F090883	GAGG	MVTIALKMKRINNCRDMLSKVTCPRMRLMWKRNYEKLLREYWEETGERILNAAGQVH
Ga0188856_10000696	F004988	N/A	RCNGNGYIRIMPVVAGVFDKATETDCPMCEEIVTHMGQRITTHSGYVKLPIKDTRKNIEGGRESKTKWSGETLPEVGKGCP