Scaffold Ga0188855_1000039

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0188855_1000039

Scaffold Ga0188855_1000039

Overview

Basic Information
Taxon OID	3300019073 Open in IMG/M
Scaffold ID	Ga0188855_1000039 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine microbial communities from Baltic Sea - GS683_0p1
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1614
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location Name	Baltic Sea
Coordinates	Lat. (^o)	54.570232	Long. (^o)	11.332183	Alt. (m)		Depth (m)	.3
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002512	Metagenome / Metatranscriptome	553	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0188855_10000392	F002512	GAGG	MSKEMTTTEIAALNKEFAVGNAFTKWKFMQTDAFKTLPDAVRYTVEKECLTHYFNMITDGMTDWKGPIKAMIPIALLNPMRKAVEYFTGTELYVMEQVDNQFKVFAKGYYMMGE

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