NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193546_10013632

Scaffold Ga0193546_10013632


Overview

Basic Information
Taxon OID3300019046 Open in IMG/M
Scaffold IDGa0193546_10013632 Open in IMG/M
Source Dataset NameMetatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_011 - TARA_X100000009 (ERX1408503-ERR1336911)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1068
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean: TARA_011
CoordinatesLat. (o)41.6686Long. (o)2.7996Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007722Metagenome / Metatranscriptome346Y
F013311Metagenome / Metatranscriptome272Y

Sequences

Protein IDFamilyRBSSequence
Ga0193546_100136322F013311AGGAGGLAFLGDFGKFFNLGSSEQVLGDVGTAVGSLFGSQGAIVGRELGKATGRATSNLAGDDNISPLSTADQALEQSAVSVSKRGDVPQEINQNLGITGGNTMQAGIGGIAPAIQGIRALAPKIGQFFGGTGGALTTGFGTGVALNALTGTGMSREKPVLTQSRRNKARVRQLVNFMGIEGASNFLSQASGQNVTANDVVMLLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMTRTTRRAPMRRASSTTLIKN
Ga0193546_100136323F007722N/AGVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLQYAIKQQSNVTDIRKNNIGG

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