Basic Information | |
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Taxon OID | 3300019046 Open in IMG/M |
Scaffold ID | Ga0193546_10013632 Open in IMG/M |
Source Dataset Name | Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_011 - TARA_X100000009 (ERX1408503-ERR1336911) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | Canada's Michael Smith Genome Sciences Centre |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1068 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → unclassified viruses → Circular genetic element sp. | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | North Atlantic Ocean: TARA_011 | |||||||
Coordinates | Lat. (o) | 41.6686 | Long. (o) | 2.7996 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007722 | Metagenome / Metatranscriptome | 346 | Y |
F013311 | Metagenome / Metatranscriptome | 272 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0193546_100136322 | F013311 | AGGAGG | LAFLGDFGKFFNLGSSEQVLGDVGTAVGSLFGSQGAIVGRELGKATGRATSNLAGDDNISPLSTADQALEQSAVSVSKRGDVPQEINQNLGITGGNTMQAGIGGIAPAIQGIRALAPKIGQFFGGTGGALTTGFGTGVALNALTGTGMSREKPVLTQSRRNKARVRQLVNFMGIEGASNFLSQASGQNVTANDVVMLLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMTRTTRRAPMRRASSTTLIKN |
Ga0193546_100136323 | F007722 | N/A | GVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLQYAIKQQSNVTDIRKNNIGG |
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