Sample 3300019046

Basic Information
IMG/M Taxon OID	3300019046 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0117946 \| Gp0217188 \| Ga0193546
Sample Name	Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_011 - TARA_X100000009 (ERX1408503-ERR1336911)
Sequencing Status	Permanent Draft
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300019046 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0117946 | Gp0217188 | Ga0193546

Sample Name

Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_011 - TARA_X100000009 (ERX1408503-ERR1336911)

Sequencing Status

Permanent Draft

Sequencing Center

Canada's Michael Smith Genome Sciences Centre

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	356916566
Sequencing Scaffolds	34
Novel Protein Genes	37
Associated Families	32

Dataset Contents

Total Genome Size

356916566

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium TMED175	2
Not Available	20
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Leisingera → unclassified Leisingera → Leisingera sp. M658	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → unclassified Rhodobacterales → Rhodobacterales bacterium TMED271	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	1
All Organisms → Viruses → unclassified viruses → Virus sp.	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Predicted Viral

All Organisms → Viruses → unclassified viruses → Circular genetic element sp.

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium TMED175

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Leisingera → unclassified Leisingera → Leisingera sp. M658

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → unclassified Rhodobacterales → Rhodobacterales bacterium TMED271

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium

All Organisms → Viruses → unclassified viruses → Virus sp.

Ecosystem Assignment (GOLD)
Name	Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Ecosystem Assignment (GOLD)

Name

Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine water body → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	North Atlantic Ocean: TARA_011
Coordinates	Lat. (^o)	41.6686	Long. (^o)	2.7996	Alt. (m)	N/A	Depth (m)	5
Location on Map

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Location Information

Location

North Atlantic Ocean: TARA_011

Coordinates

Lat. (^o)

41.6686

Long. (^o)

2.7996

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000200	Metagenome / Metatranscriptome	1633	Y
F000379	Metagenome / Metatranscriptome	1211	Y
F000953	Metagenome / Metatranscriptome	822	Y
F002223	Metagenome / Metatranscriptome	581	Y
F005911	Metagenome / Metatranscriptome	386	Y
F006699	Metagenome / Metatranscriptome	366	Y
F007531	Metagenome / Metatranscriptome	349	Y
F007722	Metagenome / Metatranscriptome	346	Y
F008818	Metatranscriptome	327	Y
F009636	Metagenome / Metatranscriptome	315	Y
F009725	Metagenome / Metatranscriptome	314	Y
F010768	Metagenome / Metatranscriptome	299	Y
F013311	Metagenome / Metatranscriptome	272	Y
F019653	Metagenome / Metatranscriptome	228	Y
F020468	Metagenome / Metatranscriptome	224	Y
F021115	Metagenome / Metatranscriptome	220	N
F023874	Metagenome / Metatranscriptome	208	Y
F029759	Metagenome / Metatranscriptome	187	Y
F037682	Metagenome / Metatranscriptome	167	Y
F042354	Metagenome / Metatranscriptome	158	Y
F053091	Metagenome / Metatranscriptome	141	N
F059061	Metagenome / Metatranscriptome	134	Y
F067842	Metagenome / Metatranscriptome	125	Y
F068862	Metatranscriptome	124	N
F074917	Metagenome / Metatranscriptome	119	N
F084330	Metagenome / Metatranscriptome	112	Y
F085817	Metagenome / Metatranscriptome	111	Y
F089015	Metagenome / Metatranscriptome	109	N
F090440	Metagenome / Metatranscriptome	108	N
F097143	Metagenome / Metatranscriptome	104	Y
F098216	Metagenome / Metatranscriptome	104	N
F105327	Metagenome / Metatranscriptome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0193546_10012650	All Organisms → Viruses → Predicted Viral	1103	Open in IMG/M
Ga0193546_10013632	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	1068	Open in IMG/M
Ga0193546_10016130	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium TMED175	990	Open in IMG/M
Ga0193546_10016414	Not Available	982	Open in IMG/M
Ga0193546_10018394	Not Available	929	Open in IMG/M
Ga0193546_10018784	Not Available	920	Open in IMG/M
Ga0193546_10018922	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium TMED175	917	Open in IMG/M
Ga0193546_10020184	Not Available	889	Open in IMG/M
Ga0193546_10021864	All Organisms → cellular organisms → Bacteria → Proteobacteria	856	Open in IMG/M
Ga0193546_10022818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Leisingera → unclassified Leisingera → Leisingera sp. M658	838	Open in IMG/M
Ga0193546_10022984	Not Available	835	Open in IMG/M
Ga0193546_10023684	Not Available	823	Open in IMG/M
Ga0193546_10026355	Not Available	780	Open in IMG/M
Ga0193546_10036010	Not Available	668	Open in IMG/M
Ga0193546_10036117	Not Available	667	Open in IMG/M
Ga0193546_10038066	Not Available	650	Open in IMG/M
Ga0193546_10038152	Not Available	650	Open in IMG/M
Ga0193546_10039215	Not Available	641	Open in IMG/M
Ga0193546_10040267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	633	Open in IMG/M
Ga0193546_10043121	Not Available	611	Open in IMG/M
Ga0193546_10044630	Not Available	601	Open in IMG/M
Ga0193546_10046234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	591	Open in IMG/M
Ga0193546_10047335	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
Ga0193546_10048743	Not Available	576	Open in IMG/M
Ga0193546_10051009	Not Available	563	Open in IMG/M
Ga0193546_10051921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	558	Open in IMG/M
Ga0193546_10054731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → unclassified Rhodobacterales → Rhodobacterales bacterium TMED271	544	Open in IMG/M
Ga0193546_10056501	Not Available	536	Open in IMG/M
Ga0193546_10057034	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	533	Open in IMG/M
Ga0193546_10060102	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	520	Open in IMG/M
Ga0193546_10060619	All Organisms → Viruses → unclassified viruses → Virus sp.	518	Open in IMG/M
Ga0193546_10063022	Not Available	508	Open in IMG/M
Ga0193546_10063503	Not Available	506	Open in IMG/M
Ga0193546_10065199	Not Available	500	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193546_10012650	Ga0193546_100126502	F097143	MIIETILGVVISAVVGGDTNPDPATMIYKGLMTGNKIIQKEKNKEIDDSIHEETHQLAKDAILKMGGDN
Ga0193546_10013632	Ga0193546_100136322	F013311	LAFLGDFGKFFNLGSSEQVLGDVGTAVGSLFGSQGAIVGRELGKATGRATSNLAGDDNISPLSTADQALEQSAVSVSKRGDVPQEINQNLGITGGNTMQAGIGGIAPAIQGIRALAPKIGQFFGGTGGALTTGFGTGVALNALTGTGMSREKPVLTQSRRNKARVRQLVNFMGIEGASNFLSQASGQNVTANDVVMLLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMTRTTRRAPMRRASSTTLIKN
Ga0193546_10013632	Ga0193546_100136323	F007722	GVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLQYAIKQQSNVTDIRKNNIGG
Ga0193546_10016130	Ga0193546_100161301	F002223	MKYKQMSQNSWIVEVQKDGKTKELFIEFPTGSLDQVGWDTGDKVIWEELPTGEFSLRKADDGDGEQGNK
Ga0193546_10016414	Ga0193546_100164141	F029759	GMFTYIHAFWALLGLNLMVFGWALYAHARVRANEKVLESLDWETLANLTGEVGAMKRSLQKVNNRINGMTAADPVQMLQELPKLQNATQPNGRIGG
Ga0193546_10018394	Ga0193546_100183942	F006699	MLKRFDFKCTVCDHIEEQWVDSEDTLATCLECGETTKRIISSVSSQFKGTGWPDADDRWARDHERAARK
Ga0193546_10018784	Ga0193546_100187842	F019653	MTTLVANYVFSPLSGLWSSLDRFTQVIGYSRAAAELARMGMIEESKRCMMEIGRLQNDR
Ga0193546_10018922	Ga0193546_100189222	F037682	MKQEELVREXXXXGERDFYRAKLDESNARVKTLEFDLAELQKRDVELSKRCSELANKGNYRPKPKRFH
Ga0193546_10018922	Ga0193546_100189224	F002223	MKYKQMSQNSWIVEVQKDGKTKELFIEFPTGSLDQVGWDTGDKVIWEELPTGEFSLRKAD
Ga0193546_10020184	Ga0193546_100201843	F009725	MLIWERFKNACVSAGYARAASQLATQGHYEEAKHLMLNGVKETVERKKAIRRLERVKKAKASYEPGNYYMKGKKVA
Ga0193546_10021864	Ga0193546_100218642	F089015	MKMSKMTAEQIVEMLARMSDAEKQKTANLLVNKWFHLTKSFVSMVDAEMQDQFMNEQAEVFEMQKAAENGTKLF
Ga0193546_10022818	Ga0193546_100228183	F042354	REDAGGTKYTGDGGVVNLDGKISSSINYSLSISDGKFDDVVYNNSEGSVTYMVLPNIGVDLMGSQIKLGTVQETDTSLGVSYNLYASSLDMKVFVGSDINNYGKFYTYGTKLNLSVTQGSRLTLSYKTEDRKQKATTMDARFVYDLTSNLGLNLGYKSTETKNAAGTAVVLKGNTTYGGIVYKF
Ga0193546_10022984	Ga0193546_100229841	F085817	MSSNLKVNKRSQKSFSVTRFSGFDGSRVQITTARDHRKEIDVSDKFFNSVNLNKQEAQDLVETLMGFINGTDNECFDSVPLVEAKKQWMDDFNKVRPGTSRIVKRDNGDVVVERPTFSKLLQENQKKLSQNDLNYFNSRRMA
Ga0193546_10023684	Ga0193546_100236841	F068862	RHTTSFLIFNIMLYKLFIALATLLVVNANAPSERSVHISTNTDVDGLNGLNLNWQVPFKVDDYVVGFRYKLNELKKYPETLFAKKIFDVADGEATVDADVNVDDKSLSANVKWVSDKLVDGMKTTLRLNGNSNDKITSVGAEVNKNVDGRDVELKGTYNLADSRLDANGKVVVDKTTAEVSYNSGDEDIRLQLSHDLDDHNTPKGSYSTKTGQVAYGWTRKWEGGELDGTYHPDNGGRAVLEWTDKGNQGDWKTRAEVPLANNEIGNSRVTIKR
Ga0193546_10026355	Ga0193546_100263551	F005911	MLKNKILNFLNSKKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSIKAKIDGADINQARLGAGDEDQIEAPVNELFHNGNFIKLSEMVKKAVIIVSDDPTATARKGYDIGYDAENSGVLIKFAAVDGNIIQPDQGDADDTIVADVHLFVNLAGTADTDSNSPYVDGTPFYYILMDSTTAGLAASLETIDSTIYASGILATNGGGPQAEVSVVLPQDSEE
Ga0193546_10036010	Ga0193546_100360102	F098216	VPKLIIGMLVAGVLLAINTTSETQDQVKFCDQYLLVAEHMNKTYSISNYMKKNGVGGVLETNHCKKKQGRI
Ga0193546_10036117	Ga0193546_100361172	F053091	MNFNSYYLWPKKFVEDTVNTEEMAERPFVDEYTEEILNKEIYDLEEEDLKSLINQLSYTASFYARLRRTVMNHTGRIMLERMM
Ga0193546_10038066	Ga0193546_100380661	F090440	GGNEISGLKLATGLRLKRIYHCRITDVGEGHDLRIIIHKSIGG
Ga0193546_10038152	Ga0193546_100381521	F068862	GGLNLNWQVPFKVDDYVVGFRYKLNELKKYPETLFAKKTFEVADGEATVDADVSVDDKSLSANVKWVSDKLVDGMKTTLRMNGNSNDKVTSVGAEVNKNVDGRDVELKGTYNLADSRLDANGKVVVDKTTAEVSYNSGDEDIRLQLSHDLDDNNTPKGSYSTKTGQVAYGWTRKWEGGELDGTYHPDNGGRAVLEWTDKGQQGDWKTRAEVPLANN
Ga0193546_10039215	Ga0193546_100392151	F105327	RMSNYIRTINMDGPAGNAMNLIATAKHMAKDHGEDGKKIVKEMMDTGEYDILVQTLLFYFGDYLRLVNSSGKDITDNYIGADNG
Ga0193546_10040267	Ga0193546_100402672	F009636	MGYFYQDWKEKKMFVENSDGXXXXGNLTEGASDEKRMAIGYMEYLADCLKKGKLEVKWNI
Ga0193546_10043121	Ga0193546_100431212	F085817	RGFDGSRVQITTARDHRKEISVSDKFFNSVNLNKQEAMDLVETLMGFINGTDNECFDSVALVEAEKQWMDDFNKVRPGTSRIVKRDNGDVVVERPTFSKLLQENQKKLSQNDLNYFNSRRMA
Ga0193546_10044630	Ga0193546_100446301	F074917	MRFAKTKPQKPTSFLATETKDKLDTIRQNPIDQKKKQCGDRCHYKHSQCSSAGFTPRRPRNPVHFLTDLSNELCGGHFSHRYLPIQVLINHDMTVSTLRFPWVFDQANVQHP
Ga0193546_10046234	Ga0193546_100462343	F023874	GVDGFGDVIESNLSWNKEDMRKNVGHLFLFMKGTWQYSDNGIDWWPAEEMLKEVA
Ga0193546_10047335	Ga0193546_100473351	F021115	MRNHDISNELDDPLSSGKIGAYSGSVKARFYKDGKLYKDIPPVDIHSELRSVLCNSKIKIKSYNVSYDKGCLVINLPDNIKGSLANLIIVKTLTTV
Ga0193546_10048743	Ga0193546_100487431	F007531	MQKKIEKQIVEFAKDTGLTERREIVHGTLYVKLHEEKECDTFHRAIRTFYKEQINNEGGVNMYAVGDEFAFDFVPADRETPVFTDEEEKGIWSEFAEEGLEKDMPDDVDTLLNLEXXXXAESKRGK
Ga0193546_10051009	Ga0193546_100510091	F006699	GGDHIEEQWVDSEDTLATCLECGETTKRIISSVSSQFKGTGWPDADDRWARDHERAARK
Ga0193546_10051921	Ga0193546_100519211	F000379	ATKHGIMVGYIDGSQNVVAVESGWKITPEEMAKFLTEKFPSNEKAREVVDSPVLIPTFKKDDYCYVDGFGDVIESNLSWNKEEMRKKVGHLFLFMKGAWQYSDNGIDWEPADEALPMPREVA
Ga0193546_10054731	Ga0193546_100547312	F084330	MASRLATFLKNIFGKTFYSNIWIATSLGLVSQVIGFTKYDGYFDLYWIIMKDGYLYFNLYPSFDELSFVLFIRVFLAIFVFLTIRDKLKGKNDLDA
Ga0193546_10056501	Ga0193546_100565012	F067842	MHEYQTCIXXXXGAVTLSVVECGYSEKNSTDNAFDTFKCLALNPNEILKIETKGI
Ga0193546_10057034	Ga0193546_100570341	F010768	VRPVPPPNSEITLIIAKRYERKRIKIEKLFTLGYTTSGDPXKIGTK
Ga0193546_10058295	Ga0193546_100582951	F000200	GIYDFRCTNGHVFEDMVESGVTTSRCGCGANATKMVSAPQCVLEGHSGDFPGRHMKWVREHEAAGRKKSPQ
Ga0193546_10060102	Ga0193546_100601021	F000953	GDDIFMRSMIEQYALEERTKVHEADDGLKTGGEPSGKFWMNEAAANAAAREVLTTHKGLTGKLLDDYMTTYFAKAWGHFDVNQTGFVEVIKMPQMXXXXMRFLCSDQYMSLGESG
Ga0193546_10060619	Ga0193546_100606191	F059061	GIAPFFGKSVQQQPAITTTRNIGGQETQGSGSIQAGAGSLLPTITGLGRQFLKSPGMQIGTGLLGLAAGELLGGQPTGMRITRKMKSQARTVLNMVGGDISAASQILGVDEQTLVMILLKRFRNDGPVVTKAALRKTKQTVRRLKSMCDMYDDLRPRAATRRRTPMKRASTT
Ga0193546_10063022	Ga0193546_100630222	F098216	VPKLIISITLVAGFLLAINTTSETQDQVKFCDKYVLIADQMNKTYSISNYMKENGVEGVLETNHCKNKQG
Ga0193546_10063503	Ga0193546_100635031	F020468	GDQILAGTTYEYVGPNTRLVVAAAADAAGTKLNFNVNNAEFARDAEVSEKVTGEPFGWKGGYVMNDMVTTAVERNRPIITFTNNSGASRTIDVAVFIATLTCRHKALRTTAVSRTKP
Ga0193546_10065199	Ga0193546_100651991	F008818	GEKSDSETNIAALAKAIPAIEKGMSGFLQTSAASVLRSLSVSMDMSSVDREMLASFLSSKTGYAPASGEIVGILKQMDDEMKADLASATANEEAAIKAFDGLVAAKTKEINALTKSIETKTARVGEIAVKTAEMENDLDDTKEDLEESKKFLADLDVNCEKKKKER

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300019046: Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_011 - TARA_X100000009 (ERX1408503-ERR1336911)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences