Scaffold Ga0193614_1000138

Overview

Basic Information

• Taxon OID: 3300018933
• Scaffold ID: Ga0193614_1000138
• Source Dataset Name: Soil crust microbial communities from Colorado Plateau, Utah, USA - earlymid stage, 42 hrs v1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: QB3 Vincent J. Coates Genomics Sequencing Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 115436
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 72 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events

Source Dataset Sampling Location

• Location Name: USA: Utah, Colorado Plateau, Green Butte Site
• Coordinates
  • Lat. (^o): 38.712053
  • Long. (^o): -109.695097

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044992	Metagenome	153	Y
F051828	Metagenome	143	Y
F090172	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193614_100013835	F051828	GGAGG	MSEKTPADLITVSEARNLLSVSWNKMAKLLRTGVVRHYPNPLDNRVKLVSKHEILRLIPNRSEAA
Ga0193614_100013848	F044992	AGGGGG	MKKEVGSYGEDNAETARFEGDDVGLPESPIYSNFSKKMWQKHTRHGLVQSPNRSRENTSDHRLTSDGEPPA
Ga0193614_100013853	F090172	AGG	MSKKPNGQPAVSPTALISQAKAAEMCGMTRAAIHDLVGRRRLRSVEVEGRDLVYLDEVVAFEKANRPRP