Metagenome / Metatranscriptome Family F090172

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090172
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	68 residues
Representative Sequence	MRKKLEEQPLADGMALISQAKAAEMCGMTRAAIHDLVRRHRFRSVEVEGRDLVYLKEVEAFEKESRLRA
Number of Associated Samples	83
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	89.81 %
% of genes near scaffold ends (potentially truncated)	12.96 %
% of genes from short scaffolds (< 2000 bps)	73.15 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.66

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.148 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (16.667 % of family members)
Environment Ontology (ENVO)	Unclassified (25.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.778 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 31.96% β-sheet: 12.37% Coil/Unstructured: 55.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.66
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.66
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF13443	HTH_26	9.26
PF00166	Cpn10	2.78
PF01192	RNA_pol_Rpb6	2.78
PF00487	FA_desaturase	2.78
PF00571	CBS	1.85
PF00076	RRM_1	0.93
PF00561	Abhydrolase_1	0.93
PF12900	Pyridox_ox_2	0.93
PF03631	Virul_fac_BrkB	0.93
PF10012	DUF2255	0.93
PF12704	MacB_PCD	0.93
PF12850	Metallophos_2	0.93
PF02325	YGGT	0.93
PF03747	ADP_ribosyl_GH	0.93
PF03683	UPF0175	0.93
PF01370	Epimerase	0.93
PF00015	MCPsignal	0.93
PF13282	DUF4070	0.93
PF00656	Peptidase_C14	0.93
PF01740	STAS	0.93
PF02954	HTH_8	0.93
PF00665	rve	0.93
PF00668	Condensation	0.93
PF13545	HTH_Crp_2	0.93
PF01627	Hpt	0.93
PF04055	Radical_SAM	0.93
PF14437	MafB19-deam	0.93
PF13432	TPR_16	0.93
PF04984	Phage_sheath_1	0.93
PF02627	CMD	0.93
PF00072	Response_reg	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	2.78
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	2.78
COG1758	DNA-directed RNA polymerase, subunit K/omega	Transcription [K]	2.78
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	2.78
COG0840	Methyl-accepting chemotaxis protein (MCP)	Signal transduction mechanisms [T]	1.85
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.93
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.93
COG4249	Uncharacterized conserved protein, contains caspase domain	General function prediction only [R]	0.93
COG3497	Phage tail sheath protein FI	Mobilome: prophages, transposons [X]	0.93
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.93
COG2886	Predicted antitoxin, contains HTH domain	General function prediction only [R]	0.93
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.93
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.93
COG1397	ADP-ribosylglycohydrolase	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.93
COG1020	EntF, seryl-AMP synthase component of non-ribosomal peptide synthetase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.93
COG0762	Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.07 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.15 %
Viruses	superkingdom	All Organisms → Viruses	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.15 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	59.26 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.78 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.78 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.93 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.78 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	0.93 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.78 %
Oscillatoriophycideae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae	0.93 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	0.93 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.78 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	0.93 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	0.93 %
Oscillatoriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.78 %
Gomontiellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Gomontiellaceae	0.93 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.93 %
unclassified Cupriavidus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.78 %
Crinalium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Gomontiellaceae → Crinalium	0.93 %
Cupriavidus sp. HMR-1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp. HMR-1	0.93 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.78 %
Crinalium epipsammum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Gomontiellaceae → Crinalium → Crinalium epipsammum	0.93 %
Cupriavidus sp. HMR-1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp. HMR-1	0.93 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %
Unclassified	root	N/A	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002899\|JGIcombinedJ43975_10002902	All Organisms → cellular organisms → Bacteria → Acidobacteria	2732	Open in IMG/M
3300004153\|Ga0063455_101082768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp. HMR-1	589	Open in IMG/M
3300005093\|Ga0062594_102858884	All Organisms → cellular organisms → Bacteria → Acidobacteria	537	Open in IMG/M
3300005184\|Ga0066671_10002327	All Organisms → cellular organisms → Bacteria	6426	Open in IMG/M
3300005186\|Ga0066676_10864255	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300005587\|Ga0066654_10466194	All Organisms → cellular organisms → Bacteria → Acidobacteria	691	Open in IMG/M
3300005616\|Ga0068852_100518360	All Organisms → cellular organisms → Bacteria → Acidobacteria	1189	Open in IMG/M
3300006794\|Ga0066658_10025008	All Organisms → cellular organisms → Bacteria	2371	Open in IMG/M
3300006800\|Ga0066660_10448571	All Organisms → Viruses → Predicted Viral	1077	Open in IMG/M
3300006894\|Ga0079215_10183055	All Organisms → cellular organisms → Bacteria → Acidobacteria	1041	Open in IMG/M
3300006918\|Ga0079216_10187561	All Organisms → cellular organisms → Bacteria	1120	Open in IMG/M
3300007004\|Ga0079218_10747976	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300007004\|Ga0079218_13309584	All Organisms → cellular organisms → Bacteria → Acidobacteria	546	Open in IMG/M
3300007790\|Ga0105679_10682657	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2054	Open in IMG/M
3300009148\|Ga0105243_12657045	All Organisms → cellular organisms → Bacteria → Acidobacteria	541	Open in IMG/M
3300009177\|Ga0105248_13181008	All Organisms → cellular organisms → Bacteria → Acidobacteria	522	Open in IMG/M
3300009789\|Ga0126307_10665816	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300009840\|Ga0126313_10856234	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300010036\|Ga0126305_10393322	All Organisms → cellular organisms → Bacteria → Acidobacteria	913	Open in IMG/M
3300010036\|Ga0126305_10671101	All Organisms → cellular organisms → Bacteria → Acidobacteria	700	Open in IMG/M
3300010038\|Ga0126315_10320213	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	960	Open in IMG/M
3300010039\|Ga0126309_10586154	All Organisms → cellular organisms → Bacteria → Acidobacteria	699	Open in IMG/M
3300010040\|Ga0126308_10401554	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300010040\|Ga0126308_11365002	All Organisms → cellular organisms → Bacteria → Acidobacteria	503	Open in IMG/M
3300010041\|Ga0126312_10488802	All Organisms → cellular organisms → Bacteria → Acidobacteria	880	Open in IMG/M
3300010044\|Ga0126310_10821461	All Organisms → cellular organisms → Bacteria → Acidobacteria	717	Open in IMG/M
3300010044\|Ga0126310_11225391	All Organisms → cellular organisms → Bacteria → Acidobacteria	603	Open in IMG/M
3300010045\|Ga0126311_10317016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Gomontiellaceae → Crinalium → Crinalium epipsammum	1179	Open in IMG/M
3300010045\|Ga0126311_11139593	All Organisms → cellular organisms → Bacteria → Acidobacteria	643	Open in IMG/M
3300010045\|Ga0126311_11571501	All Organisms → cellular organisms → Bacteria → Acidobacteria	553	Open in IMG/M
3300010166\|Ga0126306_10041194	All Organisms → cellular organisms → Bacteria	3166	Open in IMG/M
3300010166\|Ga0126306_10718104	All Organisms → cellular organisms → Bacteria → Acidobacteria	802	Open in IMG/M
3300010397\|Ga0134124_11759432	All Organisms → cellular organisms → Bacteria → Acidobacteria	653	Open in IMG/M
3300010400\|Ga0134122_11174874	All Organisms → cellular organisms → Bacteria → Acidobacteria	766	Open in IMG/M
3300012043\|Ga0136631_10468154	All Organisms → cellular organisms → Bacteria → Acidobacteria	516	Open in IMG/M
3300012188\|Ga0136618_10229332	All Organisms → cellular organisms → Bacteria → Acidobacteria	804	Open in IMG/M
3300012212\|Ga0150985_110436001	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	830	Open in IMG/M
3300012212\|Ga0150985_119998408	All Organisms → cellular organisms → Bacteria → Acidobacteria	532	Open in IMG/M
3300012469\|Ga0150984_102093446	All Organisms → cellular organisms → Bacteria → Acidobacteria	695	Open in IMG/M
3300012469\|Ga0150984_108913437	All Organisms → cellular organisms → Bacteria → Acidobacteria	502	Open in IMG/M
3300012678\|Ga0136615_10131293	All Organisms → cellular organisms → Bacteria	1191	Open in IMG/M
3300012681\|Ga0136613_10273785	All Organisms → cellular organisms → Bacteria	940	Open in IMG/M
3300012684\|Ga0136614_10329954	All Organisms → cellular organisms → Bacteria	1127	Open in IMG/M
3300014487\|Ga0182000_10263508	All Organisms → cellular organisms → Bacteria → Acidobacteria	698	Open in IMG/M
3300014488\|Ga0182001_10000003	All Organisms → cellular organisms → Bacteria	60224	Open in IMG/M
3300014488\|Ga0182001_10134035	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300014488\|Ga0182001_10184911	All Organisms → cellular organisms → Bacteria → Acidobacteria	747	Open in IMG/M
3300015161\|Ga0167623_1000051	All Organisms → cellular organisms → Bacteria	67199	Open in IMG/M
3300017789\|Ga0136617_10005582	All Organisms → cellular organisms → Bacteria	11252	Open in IMG/M
3300017789\|Ga0136617_10019318	All Organisms → cellular organisms → Bacteria	6078	Open in IMG/M
3300017789\|Ga0136617_11057386	All Organisms → cellular organisms → Bacteria → Acidobacteria	614	Open in IMG/M
3300018000\|Ga0184604_10092208	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M
3300018431\|Ga0066655_10663278	All Organisms → cellular organisms → Bacteria → Acidobacteria	705	Open in IMG/M
3300018432\|Ga0190275_10697327	All Organisms → cellular organisms → Bacteria → Acidobacteria	1072	Open in IMG/M
3300018432\|Ga0190275_10805513	All Organisms → cellular organisms → Bacteria → Acidobacteria	1003	Open in IMG/M
3300018465\|Ga0190269_10762137	All Organisms → cellular organisms → Bacteria → Acidobacteria	689	Open in IMG/M
3300018466\|Ga0190268_10047729	All Organisms → cellular organisms → Bacteria → Acidobacteria	1673	Open in IMG/M
3300018466\|Ga0190268_11548284	All Organisms → cellular organisms → Bacteria → Acidobacteria	580	Open in IMG/M
3300018468\|Ga0066662_10005429	All Organisms → cellular organisms → Bacteria → Acidobacteria	6258	Open in IMG/M
3300018468\|Ga0066662_10031291	All Organisms → cellular organisms → Bacteria → Acidobacteria	3160	Open in IMG/M
3300018469\|Ga0190270_10775093	All Organisms → cellular organisms → Bacteria	962	Open in IMG/M
3300018915\|Ga0193591_1129406	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300018920\|Ga0190273_10058771	All Organisms → cellular organisms → Bacteria → Acidobacteria	1980	Open in IMG/M
3300018920\|Ga0190273_11921631	All Organisms → cellular organisms → Bacteria → Acidobacteria	544	Open in IMG/M
3300018933\|Ga0193614_1000138	All Organisms → cellular organisms → Bacteria	115436	Open in IMG/M
3300019377\|Ga0190264_10252302	All Organisms → cellular organisms → Bacteria → Acidobacteria	1025	Open in IMG/M
3300019377\|Ga0190264_10846657	All Organisms → cellular organisms → Bacteria → Acidobacteria	704	Open in IMG/M
3300019767\|Ga0190267_10336167	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300019767\|Ga0190267_10360065	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300019767\|Ga0190267_10461008	All Organisms → cellular organisms → Bacteria → Acidobacteria	735	Open in IMG/M
3300019767\|Ga0190267_10749856	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300019767\|Ga0190267_11163444	All Organisms → cellular organisms → Bacteria → Acidobacteria	561	Open in IMG/M
3300019767\|Ga0190267_11374005	All Organisms → cellular organisms → Bacteria → Acidobacteria	534	Open in IMG/M
3300020146\|Ga0196977_1007881	All Organisms → cellular organisms → Bacteria → Acidobacteria	2678	Open in IMG/M
3300020215\|Ga0196963_10471769	All Organisms → cellular organisms → Bacteria → Acidobacteria	567	Open in IMG/M
3300021061\|Ga0196973_1088651	All Organisms → cellular organisms → Bacteria → Acidobacteria	614	Open in IMG/M
3300021067\|Ga0196978_1000093	All Organisms → cellular organisms → Bacteria	44327	Open in IMG/M
3300021184\|Ga0196959_10089973	All Organisms → cellular organisms → Bacteria → Acidobacteria	692	Open in IMG/M
3300021445\|Ga0182009_10297152	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300024430\|Ga0196962_10083039	All Organisms → cellular organisms → Bacteria → Acidobacteria	984	Open in IMG/M
3300024430\|Ga0196962_10134463	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300026312\|Ga0209153_1017247	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	2350	Open in IMG/M
3300026552\|Ga0209577_10885044	Not Available	501	Open in IMG/M
3300027618\|Ga0208736_1053509	All Organisms → cellular organisms → Bacteria	1000	Open in IMG/M
3300027706\|Ga0209581_1005340	All Organisms → cellular organisms → Bacteria	9851	Open in IMG/M
3300028578\|Ga0272482_10003760	All Organisms → cellular organisms → Bacteria → Acidobacteria	4221	Open in IMG/M
3300028578\|Ga0272482_10010848	All Organisms → cellular organisms → Bacteria → Proteobacteria	2291	Open in IMG/M
3300028778\|Ga0307288_10475214	All Organisms → cellular organisms → Bacteria → Acidobacteria	515	Open in IMG/M
3300030511\|Ga0268241_10023736	All Organisms → cellular organisms → Bacteria → Acidobacteria	1217	Open in IMG/M
3300030513\|Ga0268242_1006297	All Organisms → cellular organisms → Bacteria	1794	Open in IMG/M
3300031091\|Ga0308201_10383744	All Organisms → cellular organisms → Bacteria → Acidobacteria	524	Open in IMG/M
3300031731\|Ga0307405_10821818	All Organisms → cellular organisms → Bacteria → Acidobacteria	780	Open in IMG/M
3300031740\|Ga0307468_102013677	All Organisms → cellular organisms → Bacteria → Acidobacteria	553	Open in IMG/M
3300034002\|Ga0334920_000180	All Organisms → cellular organisms → Bacteria	27677	Open in IMG/M
3300034005\|Ga0334930_028768	All Organisms → cellular organisms → Bacteria → Acidobacteria	893	Open in IMG/M
3300034006\|Ga0334934_001974	All Organisms → cellular organisms → Bacteria → Acidobacteria	3250	Open in IMG/M
3300034008\|Ga0334942_010173	All Organisms → cellular organisms → Bacteria	2417	Open in IMG/M
3300034009\|Ga0334944_012887	All Organisms → cellular organisms → Bacteria → Acidobacteria	1582	Open in IMG/M
3300034024\|Ga0334927_000452	All Organisms → cellular organisms → Bacteria	23612	Open in IMG/M
3300034026\|Ga0334946_000070	All Organisms → cellular organisms → Bacteria	73218	Open in IMG/M
3300034030\|Ga0334952_000045	All Organisms → cellular organisms → Bacteria	81793	Open in IMG/M
3300034135\|Ga0334929_008726	All Organisms → cellular organisms → Bacteria	2452	Open in IMG/M
3300034145\|Ga0334963_000203	All Organisms → cellular organisms → Bacteria	30098	Open in IMG/M
3300034173\|Ga0334925_000697	All Organisms → cellular organisms → Bacteria	9788	Open in IMG/M
3300034221\|Ga0334937_017748	All Organisms → cellular organisms → Bacteria → Proteobacteria	1832	Open in IMG/M
3300034376\|Ga0334923_003119	All Organisms → cellular organisms → Bacteria → Acidobacteria	3018	Open in IMG/M
3300034377\|Ga0334931_000105	All Organisms → cellular organisms → Bacteria → Acidobacteria	47673	Open in IMG/M
3300034392\|Ga0334912_003777	All Organisms → cellular organisms → Bacteria → Acidobacteria	1400	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.59%
Host-Associated	Host-Associated	7.41%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.33%
Aquatic	Environmental → Aquatic	9.26%
Plants	Host-Associated → Plants	7.41%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.33%
Freshwater	Environmental → Aquatic → Freshwater	8.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.63%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.78%
Sediment	Environmental → Aquatic → Sediment	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.81%
Sand	Environmental → Terrestrial → Soil → Sand	9.26%
Ice	Environmental → Aquatic → Freshwater → Ice	8.33%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	8.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Loam	Environmental → Terrestrial → Soil → Loam	0.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.59%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.26%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	9.26%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	8.33%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	8.33%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	5.56%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.78%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.67%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	14.81%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	7.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.41%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	7.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.48%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	5.56%
Hypolithic Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust	4.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.70%
Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust	3.70%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.78%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	1.85%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.85%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.85%
Polar Desert	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert	0.93%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.93%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012043	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ601 (22.06)	Environmental	Open in IMG/M
3300012188	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ330 (21.06)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012678	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ288 (22.06)	Environmental	Open in IMG/M
3300012681	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ272 (21.06)	Environmental	Open in IMG/M
3300012684	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental	Open in IMG/M
3300015161	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G1B, Ice margin)	Environmental	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018915	Soil crust microbial communities from Colorado Plateau, Utah, USA - late stage, 0 min after wetting v1	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300018933	Soil crust microbial communities from Colorado Plateau, Utah, USA - earlymid stage, 42 hrs v1	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300020146	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_10-13C	Environmental	Open in IMG/M
3300020215	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_5	Environmental	Open in IMG/M
3300021061	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_5-13C	Environmental	Open in IMG/M
3300021067	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20-13C	Environmental	Open in IMG/M
3300021184	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300024430	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027618	Polar desert microbial communities from Antarctic Dry Valleys - UQ255 (SPAdes)	Environmental	Open in IMG/M
3300027706	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)	Environmental	Open in IMG/M
3300028578	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT160D0	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300030511	Bulk soil microbial communities from Mexico - Amatitan (Am) metaG (v2)	Environmental	Open in IMG/M
3300030513	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG (v2)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300034002	Biocrust microbial communities from Mojave Desert, California, United States - 16HMC	Environmental	Open in IMG/M
3300034005	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 26HNS	Environmental	Open in IMG/M
3300034006	Biocrust microbial communities from Mojave Desert, California, United States - 30SMC	Environmental	Open in IMG/M
3300034008	Biocrust microbial communities from Mojave Desert, California, United States - 38SMC	Environmental	Open in IMG/M
3300034009	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 40SMS	Environmental	Open in IMG/M
3300034024	Biocrust microbial communities from Mojave Desert, California, United States - 23HNC	Environmental	Open in IMG/M
3300034026	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 42SMS	Environmental	Open in IMG/M
3300034030	Biocrust microbial communities from Mojave Desert, California, United States - 48SNC	Environmental	Open in IMG/M
3300034135	Biocrust microbial communities from Mojave Desert, California, United States - 25HNC	Environmental	Open in IMG/M
3300034145	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 59SNS	Environmental	Open in IMG/M
3300034173	Biocrust microbial communities from Mojave Desert, California, United States - 21HNC	Environmental	Open in IMG/M
3300034221	Biocrust microbial communities from Mojave Desert, California, United States - 33SMC	Environmental	Open in IMG/M
3300034376	Biocrust microbial communities from Mojave Desert, California, United States - 19HNC	Environmental	Open in IMG/M
3300034377	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 27HNS	Environmental	Open in IMG/M
3300034392	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 8HMS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ43975_100029025	3300002899	Soil	MRKSLEEQPSADERGLISQAKAAEMCGMTRAAIHDLVRRRRFHSVEVEGRDLVYLKEVVAFEKEARLRQ*
Ga0063455_1010827681	3300004153	Soil	MRKRSEKQPDGSDERLISQAKAAELCGMTREAIHNLVRRRRFRSIEVEGRDLVYLEEVEAFAGERE*
Ga0062594_1028588841	3300005093	Soil	MRKRLEEQPNADGMALISQAKAAEMCGMTRAAIHELVRRRRFRSVEVEGRDLVYLK
Ga0066671_1000232710	3300005184	Soil	MRNKSEKQPDVSNEPLISQAKAAEMCGMTRDAIHNLVRRRRFRSVEVEGRDLVYLEEVEAFSKENQ*
Ga0066676_108642552	3300005186	Soil	MRKKSDLQLDGSNGQLISQAKAAEMCGMTREKIHNLVCRGRFHSIEVEGRDLVYLEEVEAFAVEQE*
Ga0066654_104661941	3300005587	Soil	FHLLLSFRRRVGGSMRKKSDLQLDGSNGQLISQAKAAEMCGMTREKIHNLVRRGRFHSIEVEGRDLVYLEEVEAFAVEQE*
Ga0068852_1005183602	3300005616	Corn Rhizosphere	MRKRLEEQPNADGMALISQAKAAEMCGMTRAAIHELVRRRRFRSVEVEGRDLVYLKEVEAFEKENH*
Ga0066658_100250084	3300006794	Soil	MRKKSDIQLDGSNGQLISQAKAAEMCGMTREKIHNLVRRGRFHSIEVEGRDLVYLEEVEAFAVEQE*
Ga0066660_104485713	3300006800	Soil	MRKKSEMQPDVLNRTLISQAKAAEMCGMTRDAIHDLVRRKRFRSVEVEGRSLVYLEEVEAFASAHE*
Ga0079215_101830552	3300006894	Agricultural Soil	MKKKLEGQPVADGSALISQAKAAEMCGMTRAAIHDLVRRRRFRSVEVEGRDLVFLKEVEAFEKEARQMA*
Ga0079216_101875612	3300006918	Agricultural Soil	VADGMALISQAKAAEMCGMTRAAIHDLVRRRRFRSVEVEGRDLVYLKEVEAFEKEDRLRHGR*
Ga0079218_107479762	3300007004	Agricultural Soil	MRKRLDEQPNSDGMALISQAKAAEMCGMTRAAIHELVRRRRFRSVEVEGRDLVFLKEVEAFEKENSLKP*
Ga0079218_133095842	3300007004	Agricultural Soil	MRKKNEGQPVADGMALISQAKAAEMCGMTRAAIHDLVRRRRFRSVEVEGRDLVYLKEVEAFEKEDRLRHGR*
Ga0105679_106826574	3300007790	Soil	MRKRLEEQPSADERGLISQAKADEMCGMTRAAIGDLVRRRRFRSVEVEGRDLVYLKEVEAFEKESRLRQ*
Ga0105243_126570451	3300009148	Miscanthus Rhizosphere	MKKRLEEQPAADAKALISQAKAAEMCGMTRAAIHDLVRRQRLRSVEVEGRDLVYLKEVEAFEKESRVNS*
Ga0105248_131810081	3300009177	Switchgrass Rhizosphere	MRKKLEEQPAADGMTLISQAKAAEMCGMTRAAIHDLVRRQRFRSVEVEGRDLVYLREVEAFEKEARQGR*
Ga0126307_106658161	3300009789	Serpentine Soil	MRKKQEGRPAADGMSLISQAKAAEMCGMTRAAIHELVRRRRFRSVEVEGRDLVYLKEVEAFEKEERR*
Ga0126313_108562341	3300009840	Serpentine Soil	MRKKLEGQPVADGTGLISQAKAAEMCGMTRAAIHDLVRRRRFRSVEVEGRDLVYLKEVEAFEKEDRQRR*
Ga0126305_103933221	3300010036	Serpentine Soil	MRKNQEGPPVADGMALISQAKAAEMCGMTREAIHDLVRRQRFRSVEVEGRNLVYLKEVEAFEKEGRQKH*
Ga0126305_106711011	3300010036	Serpentine Soil	MRKKQEGQPAADGMSLISQAKAAEMCGMTRAAIHELVRRRRFRSVEVEGRDLVYLKEVEAFEKEDRQRR*
Ga0126315_103202133	3300010038	Serpentine Soil	MSKKQNGQPVADGMSLISQAKAAEMCGMTRAAIHELVRRRRFRSVEVEGRELVYLKEVEAFEKEDRQRR*
Ga0126309_105861541	3300010039	Serpentine Soil	MRKKLDEQPNADGMALISQAKAAEMCGMTRAAIHDLVRRQRFRSVEVEGRDLVYLKEVEAFEKEGRPRH*
Ga0126308_104015541	3300010040	Serpentine Soil	MRKRLEEQQNADGAGLISQAKAAEMCGMTRAAIHELVRRRRFRSVEVEGRDLVYLKEVEAFEKEERR*
Ga0126308_113650021	3300010040	Serpentine Soil	MRKRLEEHPNADGSALISQAKAAEMCGMTRAAIHELVRRRRFRSVEVEGRDLVYLKEVEAFEKENSLRA*
Ga0126312_104888022	3300010041	Serpentine Soil	MRKKQEGPSVADGAALISQAKAAEMCGMTREAIHDLVRRRRFRSVEVEGRDLVYLK
Ga0126310_108214611	3300010044	Serpentine Soil	MRKRLEEQPNADGMALISQAKAAEMCGMTRAAIHDLVSRRRFRSVEVEGRDLVYLKEVEAFEKEDRPRH*
Ga0126310_112253911	3300010044	Serpentine Soil	MRKKQEGPSVAGGAALISQAKAAEMCGMTREAIHDLVRRRRFRSVEVEGRDLVYLKEVEAFEKGDRHRREG*
Ga0126311_103170161	3300010045	Serpentine Soil	MRKKREEQPVADGSALISQAKAAEMCGMTRAAIHDLVRRHRFRSVEVEGRELVFLKEVEAFEKESRQTA*
Ga0126311_111395931	3300010045	Serpentine Soil	MRKILKEQPNADGMVLISQAKAAEMCGMTRAAIHELVRRRRFRSVEVEGRDLVYLKEVEAFEKENSLRA*
Ga0126311_115715011	3300010045	Serpentine Soil	MRKKQEGRPAADGMSLISQAKAAEMCGMTRAAIHELVRRRRFRSVEVEGRDLVYLKEVEAFEK
Ga0126306_100411941	3300010166	Serpentine Soil	MSRKQEGQPAADGKALISQAKAAEMCGMTRAAIHELVRRRRFRSVEVEGRELVYLKEVEAFEREERRGG*
Ga0126306_107181044	3300010166	Serpentine Soil	MRKIPEAQPTTDEHGLISQAKAAEMCGMTRAAIHDLVRRRRFRSVEVEGRDLVYLKEVEAFEKENSLRP*
Ga0134124_117594321	3300010397	Terrestrial Soil	MRKIIKEQPNADGMVLISQAKAAEMCGMTRAAIHELVRRRRFRSVEVEGRDLVYLKEVEAFEKEDRPRH*
Ga0134122_111748741	3300010400	Terrestrial Soil	FMRKKLEEQPAADARALISQAKAAEMCGMTRAAIHDLVRRQRLRSVEVEGRDLVYLKEVEAFEKENRPVS*
Ga0136631_104681541	3300012043	Polar Desert Sand	MTKKSEKQWDAHETPLISQAKAAEMCGMTRAAIHDLVRRRRFLSVEVEGRDLVYLKEVEAFAGERE*
Ga0136618_102293322	3300012188	Polar Desert Sand	MKEKTEKQSGGHDEPLISQAKAAELCGMTRAAIYDLVRRGRFRSVEVEGRDLVYFKEVETFAREER*
Ga0150985_1104360013	3300012212	Avena Fatua Rhizosphere	MRKRLEEQPNVDGRALISQAKAAEMCGMTRAAIEDLVRRRRFRSVEVEGRALVYLQEIEAFEKEHSLRP*
Ga0150985_1199984082	3300012212	Avena Fatua Rhizosphere	MRKKQEGPPVADGMALISQAKAAEMCGMTREAIHDLVRRRRFRSVEVEGRALVYLKEVEAFEKENRQRCRQ*
Ga0150984_1020934461	3300012469	Avena Fatua Rhizosphere	MRKKLEKQTDAANESLISQAKAAEMCGMTRAAIHDLVRRRRFRSVEVEGRDLVYLEEVEAFAGQHHRA*
Ga0150984_1089134371	3300012469	Avena Fatua Rhizosphere	MRKKLDKEQPAADVRALISQAKAAEMCGMTRAAIHDLVRRQRLRSVEVEGRDLVYLKEVEAFEKESRLRA*
Ga0136615_101312931	3300012678	Polar Desert Sand	MTKKSEKQWDAHETPLISQAKAAEMCGMTRAAIHDLVRRRRFLSVEVEGRNLV
Ga0136613_102737852	3300012681	Polar Desert Sand	MTKKSEKQWDAHETPLISQAKAAEMCGMTRAAIHDLVRRRRFLSVEVEGRNLVYLKEVEAFAGEHE*
Ga0136614_103299542	3300012684	Polar Desert Sand	MTKKSEKQWDAHEAPLISQAKAAELCGMTRAAIQDLVRRRRFLSVEVEGRDLVYLKEVEAFAGERE*
Ga0182000_102635081	3300014487	Soil	MRKRLEEQPNADGMVLISQAKAAEMCGMTRAAIHELVRRRRFRSVEVEGRDLVYLKEIEAFEKEERQTL*
Ga0182001_100000034	3300014488	Soil	MRKISEKQPDASDERLISQAKAAEMCGMTREAIHNLVRRGRFHSTEVEGRDLVYLEEVEAFAGERK*
Ga0182001_101340352	3300014488	Soil	MRKTLEEQSNADGTALISQAKAAEMCGMTRAAIQDLVRRQRLRSVELGGRNLVYLKEVEAFEKADRLKL*
Ga0182001_101849111	3300014488	Soil	MFMRKRLEEQPNADGMALISQAKAAEMCGMTRAAIHELVRRQRFRSVEVEGRDLVYLKEVEAFEKEDRLRH*
Ga0167623_10000517	3300015161	Glacier Forefield Soil	MTKKSEKQGDAREALLISQAKAAEMCGMTRAAIRDLVRTRRFGSIEVEGRDLVYLEEVEAFAGNTNK*
Ga0136617_1000558214	3300017789	Polar Desert Sand	MTKKSEKQWDAHETPLISQAKAAEMCGMTRAAIHDLVRRRRFLSVEVEGRNLVYLKEVEAFAGEHE
Ga0136617_100193187	3300017789	Polar Desert Sand	MKEKTEKQSGGHDEPLISQAKAAELCGMTRAAIYDLVRRGRFRSVEVEGRDLVYFKEVETFAREER
Ga0136617_110573862	3300017789	Polar Desert Sand	MKNKTEKQSATTNEEMISQAKAAEMCGMTRAAIHDLVRRGRFRSVEVDGYDRVYVKEVEAFAREER
Ga0184604_100922081	3300018000	Groundwater Sediment	MRKKLDKQSDASDEPLISQAKAAEMCGMTRDAIHDLVRRRRLRSIEVEGRDLVYLEEIKTFAGEHE
Ga0066655_106632782	3300018431	Grasslands Soil	MRKKSDIQLDGSNGQLISQAKAAEMCGMTREKIHNLVRRGRFHSIEVEGRDLVYLEEVEAFAVEQE
Ga0190275_106973272	3300018432	Soil	MRKKQEGQPVEDGMALISQAKAAEMCGMTRAAIGDLVRRRRFRSVEVEGRDLVYLKEVEAFEKEDRQRRGY
Ga0190275_108055132	3300018432	Soil	MRKKLEEQPLADGMALISQAKAAEMCGMTRAAIHDLVRRHRFRSVEVEGRDLVYLKEVEAFEKESRLRA
Ga0190269_107621372	3300018465	Soil	MRKRLEGQPAGDEQGLISQAKAAEMCGMTRAAIHDLVRQRRFRSVEVEGRDLVYFKEIEAFEKEARLRP
Ga0190268_100477293	3300018466	Soil	MKKKLEEQPVADGSALISQAKAAEMCGMTRAAIHDLVRRHRFRSVEVEGRELVFLKEVEAFEKESRQTA
Ga0190268_115482841	3300018466	Soil	MKKNSEQQHDAANEPLISQAKAAEMCGMTRAAIHDMVSRGRLRSVEVEGRDLVYRKEVEAFERELR
Ga0066662_1000542910	3300018468	Grasslands Soil	MRKKSEMQPDVLNRTLISQAKAAEMCGMTRDAIHDLVRRKRFRSVEVEGRSLVYLEEVEAFASAHE
Ga0066662_100312913	3300018468	Grasslands Soil	MRNKSEKQPDVSNEPLISQAKAAEMCGMTRDAIHNLVRRRRFRSVEVEGRDLVYLEEVEAFSKENK
Ga0190270_107750931	3300018469	Soil	MRMKSEKLTDAVDAPLISQAKAAEMCGMTRAAIHNLVRRGRFGSIEVEGRDLVYLEEVEAFAVEHE
Ga0193591_11294062	3300018915	Soil	MRKKQEGQPVSDGMGLISQAKAAEMCGMTRAAIHDLVRRQRFRSVEVEGRALVYLKEVEAFEKEGRLGA
Ga0190273_100587715	3300018920	Soil	MRKRLEEQPNADGMVLISQAKAAEMCGMTRAAIHELVRRRRFRSVEVEGRDLVYLKEVEAFEKEQSLRH
Ga0190273_119216311	3300018920	Soil	MTKKSEKQRDAHEAPLISQAKAAEMCGMTRAAIHDLVRRRRFRSVEVEGRDLIYLEEVEAFAGEHEQVVARR
Ga0193614_100013853	3300018933	Soil	MSKKPNGQPAVSPTALISQAKAAEMCGMTRAAIHDLVGRRRLRSVEVEGRDLVYLDEVVAFEKANRPRP
Ga0190264_102523023	3300019377	Soil	MRRRIGYAVDEECLFAMKKNSEQQHDAANEPLISQAKAAEMCGMTRAAIHDMVSRGRLRSVEVEGRDLVYRKEVEAFERELR
Ga0190264_108466572	3300019377	Soil	MRKRLEEQPNADGMGLISQAKAAEMCGMTRAAIHELVRRRRFRSVEVEGRDLVYLKEVEAFEKENSLRA
Ga0190267_103361672	3300019767	Soil	MLRDHPEWQPGTTDEPLISQAKAAEMCGMTRAAIHDLVTGGRFRSVDVEGRALVYLKEVEEFAKKRPWT
Ga0190267_103600652	3300019767	Soil	MRNKSEKQTGEANEPLISQAKAAEMCGMTRAAIHDLVRRRRFRSVEVAGRDLVYLEEVEAFAGEHK
Ga0190267_104610082	3300019767	Soil	MRKKLEEQPVADGSALISQAKAAEMCGMTRAAIHDLVRRHRFRSVEVEGRELVFLKEVEAFEKESRLTA
Ga0190267_107498561	3300019767	Soil	TTAAKGRRPMLRGNSEWQPGTFEEPLISQAKAAELCGMTRAAIQELVRRQRFRSAEVQGRDLVYLKEIEAFAKTRK
Ga0190267_111634441	3300019767	Soil	MRRRLEKQPAADAQGLISQAKAAEMCGMTRAAIHELVRQQRFRSVEVEGRELVYLKEVEAFEKEARPR
Ga0190267_113740051	3300019767	Soil	MRKRPEAQPTADEHGLISQAKAAEMCGMTRAAIHDLVLRRRFRSVEVEGRDLVYLKEVESFEKENSLRA
Ga0196977_10078813	3300020146	Soil	MKKRLEEQPAADEQGLISQAKAAEMCGMTRAAIHDLVRRQRFRSVEVEGRDLVYLKEVVAFEKENRLRQ
Ga0196963_104717691	3300020215	Soil	MRKQLEEQPPVDGGALISQAKAAEMCGLTRATIHDLVRGGRFRSVEVEGRDMVYLKEVVAFEKESRPNS
Ga0196973_10886511	3300021061	Soil	MRKKQEGPPVADGMALISQAKAAEMCGMTREAIHNLVRRRRFRSVEVEGRALVYLKEVEAFEKEDRHRHRQ
Ga0196978_100009322	3300021067	Soil	MRKRLEEQPSAEERGLISQAKAAEMCGMTRAAIHELVRRQRFRSVEVEGRDLVYLKEVVAFEKEARLRQ
Ga0196959_100899732	3300021184	Soil	MRKKLGEQPVADGMALISQAKAAEMCGMTRAAIHDLVRRRRLNSIEVEGRDLVYLKEVEAFEKEGRPRP
Ga0182009_102971522	3300021445	Soil	MKKRTDKQPDAPDERLISQAKAAEMCGMTREAILNLVRRGRFHSMEVEGRNLVYLEEVEAFAGEHK
Ga0196962_100830392	3300024430	Soil	MSNNPERQAGAPQEALISQAKAAEMCGMTRAAIQDLVRRRRFRSVPVEGRDLVYLKEVEAFAKTRE
Ga0196962_101344631	3300024430	Soil	MKKQPEGQLAADGKGLISQAKAAEICGMTRAMINDLVRSGRFNSVEVEGRDMVYLKEVVAFEKESRPNS
Ga0209153_10172475	3300026312	Soil	MRNKSEKQPDVSNEPLISQAKAAEMCGMTRDAIHNLVRRRRFRSVEVEGRDLVYLEEVEAFSKENQ
Ga0209577_108850441	3300026552	Soil	MRKKSEMQPDVLNRTLISQAKAAEMCGMTRDAIHDLVRRKRFRSVEVEGRSLVYL
Ga0208736_10535091	3300027618	Polar Desert	MTKKSEKQWDAHEAPLISQAKAAELCGMTRAAIQDLVRRRRFLSVEVEGRDLVYLKEVEAFAGERE
Ga0209581_10053404	3300027706	Surface Soil	MRKRLEEPPNVDGRALISQAKAAEMCGMTRAAIHDLVRRRRFRSVEVEGRDLVYLEEVETFAAEREKMQNPA
Ga0272482_100037602	3300028578	Soil	MRNNPERQSGVPDEPLISQAKAAEMCGMTRAAIHELVRRHRFRSVPVEGRDLVYLKEVEAFARTRE
Ga0272482_100108482	3300028578	Soil	MRMKSEKLTDAVNAPLISQAKAAEMCGMTRAAIHDLVRRRRFRSVEVEGRDLVYLEEVEAFAGEKE
Ga0307288_104752142	3300028778	Soil	MRKKLDEEQPAADVRALISQAKAAEMCGMTRAAIHDLVRRQRLRSVEVEGRDLVYLKEVEAFEKESRLRA
Ga0268241_100237363	3300030511	Soil	MKKRLEEQPNADERGLISQAKAAEMCGMTRAAINDLVRRRRFRSVEVEGRDLVYLNEVVAFEKESRLRL
Ga0268242_10062974	3300030513	Soil	MRKISEKQPDASDERLISQAKAAEMCGMTREAIHNLVRRGRFHSTEVEGRDLVYLEEVEAFAGERK
Ga0308201_103837442	3300031091	Soil	SFMRKKQEGPPAADGMALISQAKAAEMCGMTRAAIHDLVRRQRFRSVTLEGRDLVYLKEVEAFEKEGRVSP
Ga0307405_108218182	3300031731	Rhizosphere	MRKKLEGPPVADGMALISQAKAAEMCGMTREAIHDLVRRRRLRSVEVEGRALVYLEEVEAFEKENRQRCRQ
Ga0307468_1020136771	3300031740	Hardwood Forest Soil	MRKKLEEQPATDSKALISQAKAAVMCGMTRAAIHDLVRRHRLRSVEVEGRDLVYLKEVEAFEKEN
Ga0334920_000180_16984_17190	3300034002	Hypolithic Biocrust	MRKKQEGPPAADGMSLISQAKAAEMCGMTRAAIQDLVRSRRFRSVEVEGRELVYLKEVEAFEKEERMG
Ga0334930_028768_366_575	3300034005	Sub-Biocrust Soil	MRKKLDEQPSADVKALISQAKAAEMCGMTRAAIHELVRRRRFRSVEVEGRDLVYLKEVEAFEKESRQTA
Ga0334934_001974_3005_3220	3300034006	Biocrust	MRKKNEGQPVADGMALISQAKAAEMCGMTRAAIQDLVRRRRFRSVEVEGRDLVFLKEVEAFEKEDRLKHGR
Ga0334942_010173_1208_1417	3300034008	Biocrust	MRKRLEAQPVGDEHGLISQAKAAEMCGMTRAAIHDLVLSRRFRSVEVEGRDLVYLKEVEAFEKESRVRN
Ga0334944_012887_393_602	3300034009	Sub-Biocrust Soil	MRKRLEEQPNADGMALISQAKAAEMCGMTRAAIHELVRRRRLRSVEVEGRDLVYLREVEAFEKEASLRQ
Ga0334927_000452_1273_1488	3300034024	Hypolithic Biocrust	MRKKQEGLPLADGMSLISQAKAAEMCGMTRAAIHDLVRRGQFRSVEVEGRDLVYLKEVEAFEKKDRQRREG
Ga0334946_000070_14914_15114	3300034026	Sub-Biocrust Soil	MTKKPVKQGNADKTLLISQAKAAEMCGMTRAAIHNLVRSRRFRSIEVEGRDLVYLEEVEAFAVEHK
Ga0334952_000045_35296_35505	3300034030	Biocrust	MRKRLEEQPNADDVALISQAKAAEMCGMTRAAIHDLVRRRRFRSVEVEGRDLVYLKEIEAFEKESRLSA
Ga0334929_008726_2084_2284	3300034135	Hypolithic Biocrust	MRKKQEERPGADEHVLISQAKAAEMCGMTRAAILSLVRRHRFRSVAVEGRDLVYLKEVEAFATERG
Ga0334963_000203_25065_25271	3300034145	Sub-Biocrust Soil	MRKKQEGQPVADGMALISQAKAAEMCGMTRAAIHDLVRRRRFRSVEIEGRELVYLKEVEAFEKEERMG
Ga0334925_000697_2202_2411	3300034173	Hypolithic Biocrust	MRKKLDEQPNADGMALISQAKAAEMCGMTRAAIHDLVRRQRLRSVEVEGRDLVYLKEVEAFEKEARPRH
Ga0334937_017748_654_863	3300034221	Biocrust	MRKRLEVQPAGDEHGLISQAKAAEMCGMTRAAIHDLVERRRFRSVEVEGRDLVYLKEVEAFEKESRVRS
Ga0334923_003119_829_1038	3300034376	Hypolithic Biocrust	MRKKLEGQPAADDFTLISQAKAAEMCGMTRAAIHELVRRRRFRSVAVEGRDLVYLKEVEAFEKEDRPGQ
Ga0334931_000105_2315_2524	3300034377	Sub-Biocrust Soil	MRKKQEGPPAADALALISQAKAAEMCGMTRAAIHELVRRRRFRSVEVEGRDLVYLKEVEAFEKGDRQGR
Ga0334912_003777_3_185	3300034392	Sub-Biocrust Soil	MRKKSEKLTDAVDAPLISQAKAAEMCGMTRAAIHDLVRSRRFRSVEVGGRELVYLEEVEV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090172

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences