Scaffold Ga0190273_10000010

Overview

Basic Information

• Taxon OID: 3300018920
• Scaffold ID: Ga0190273_10000010
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 174522
• Total Scaffold Genes: 189
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 135 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.4668
  • Long. (^o): -109.6253

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016854	Metagenome / Metatranscriptome	244	Y
F031439	Metagenome / Metatranscriptome	182	Y
F049823	Metagenome	146	Y
F081191	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190273_10000010109	F016854	GAG	MAAPNTKSIPKPGEVWLSCPPYLMMARIVEIDAAAEPPVVSYELHDEDGSLLQAVEHATLDQGWWRTFQRLEPRFG
Ga0190273_10000010112	F081191	GAG	MTQRRQKLPQPEEVVAAIVELADDGFCRRAELVQRFPRLGERDLRRALRRAVGLGLVIERRGPDGAFHVAVSSEGWNLLRNG
Ga0190273_10000010183	F049823	AGGA	VPSQPVQGSYEVARGVVPREKIDDVLRLLHLDLLQRGAAPEELSEWLWGAHWFPHLRQREEVLALAESLPEEWRSGQICEPQILLQFPHVGLEPEIVFHLDQEPAWAGERPYLRIVGVPLSSWRGNNGGLLVQTAEGPAPVEADPGDAIMMTPDLPHSGGVNHTGSLRYGVYFRWLAER
Ga0190273_1000001082	F031439	AGG	MYFIPIVLFILLGLIAVAWTPIFALIIFAIGFALFLGYVAMKPRADEKLAPPEQPGRQPQHENETPTGIWGERRPS