Scaffold Ga0188867_1000193

Overview

Basic Information

• Taxon OID: 3300018642
• Scaffold ID: Ga0188867_1000193
• Source Dataset Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS695_0p1
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2168
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 54.570232
  • Long. (^o): 11.332183
  • Depth (m): 19

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019141	Metagenome / Metatranscriptome	231	Y
F033429	Metagenome / Metatranscriptome	177	N
F063588	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0188867_10001933	F033429	AGAAGG	MITDNTTENDLLAETIEELGQSLTELQQVIADIKEHVNYRTEDN
Ga0188867_10001935	F063588	AGGAG	MQFNVAGMFLNIEPRFGIGLDIESVESRPVWTIKDGELSTMAFDGLVLLVPFFIVTLGNVWTEAEEEC
Ga0188867_10001937	F019141	GGAG	MSKIKEQLIGYEQNDWIADEDHVKGDEVTEYLLYAMSVAEMQQAARQHIQHDLYTMARSDFNKVHYDTIGVHTK