NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0188872_1000233

Scaffold Ga0188872_1000233


Overview

Basic Information
Taxon OID3300018613 Open in IMG/M
Scaffold IDGa0188872_1000233 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Baltic Sea - GS846_ls3
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4378
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)54.570232Long. (o)11.332183Alt. (m)Depth (m).3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001145Metagenome / Metatranscriptome765Y
F001219Metagenome / Metatranscriptome744Y

Sequences

Protein IDFamilyRBSSequence
Ga0188872_10002335F001219N/AMNFPITFFINASGLFDFDFTFPTEALLFLILAGVTTTVFISPVSQQMDERAEFINYTLRKSTILLTFGYEKLTTCVGLLTAEIDEMNRQIKLVKNYTNSKFEEEIEVVQKENMTILSQLKGDLSVKSAYLFSNVTNDLISLTDKFFSKKFQSAS
Ga0188872_10002336F001145N/AMNWNLFSFFLNSEGSFIEFNTNILETNIINIFLLFGLLFYANKVSFSGTLEERQKEIIQTIENAQKDVLNASNYYYLAEKGFTQSLFWLHSWKTLYAKDKVEIVNSKYKTVKTGLTETFSTTENLITNFENKAFVALQRYIIFITASKILRKFFFLSEKEQSKLIEVTISNLGGS

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