Scaffold Ga0188872_1000233

Overview

Basic Information

• Taxon OID: 3300018613
• Scaffold ID: Ga0188872_1000233
• Source Dataset Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS846_ls3
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4378
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 54.570232
  • Long. (^o): 11.332183
  • Depth (m): .3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001145	Metagenome / Metatranscriptome	765	Y
F001219	Metagenome / Metatranscriptome	744	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0188872_10002335	F001219	N/A	MNFPITFFINASGLFDFDFTFPTEALLFLILAGVTTTVFISPVSQQMDERAEFINYTLRKSTILLTFGYEKLTTCVGLLTAEIDEMNRQIKLVKNYTNSKFEEEIEVVQKENMTILSQLKGDLSVKSAYLFSNVTNDLISLTDKFFSKKFQSAS
Ga0188872_10002336	F001145	N/A	MNWNLFSFFLNSEGSFIEFNTNILETNIINIFLLFGLLFYANKVSFSGTLEERQKEIIQTIENAQKDVLNASNYYYLAEKGFTQSLFWLHSWKTLYAKDKVEIVNSKYKTVKTGLTETFSTTENLITNFENKAFVALQRYIIFITASKILRKFFFLSEKEQSKLIEVTISNLGGS