Scaffold Ga0188861_1000147

Overview

Basic Information

• Taxon OID: 3300018563
• Scaffold ID: Ga0188861_1000147
• Source Dataset Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS684_3p0
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1520
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 54.570232
  • Long. (^o): 11.332183
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004235	Metagenome / Metatranscriptome	447	Y
F020386	Metagenome / Metatranscriptome	224	Y
F025320	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0188861_10001472	F004235	AGGAGG	MATSSRTVAPLIAESRMIGKPITMISVDWDVDADGSLLAMEAIHNAILSRGTIIAAGAVYDTGTKQDYILEGNLTDTINNFTSLDGTVSGTLAQVLVEDIVNLGTVDSIDFTSGTVACSIKTTLKFA
Ga0188861_10001473	F020386	AGGAG	MTISRNNFTSLPVAAEQEGVDVSYFTVDFINAMNSETGDPQADSTAAGLALVQAAIMNQGINILATGPLGNANTELTYMVRTDSLDVANHITANGLRDAIRAVDTAGRAASAIPRNTANFSSATVTAKTLAIAV
Ga0188861_10001474	F025320	AGGAG	MTTKINPTKLNTTDHLSGKTITAVTVDFAVNGTDFSSTEMGPLGAVQAAIATMTQEATPIIITKLRSDGSNAGQVFDMVFEGEFGTDTYDGTNSEAFAAYLQTVVRLLTSVGAGSVNLNSATVVAATAASF