NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190271_10658927

Scaffold Ga0190271_10658927


Overview

Basic Information
Taxon OID3300018481 Open in IMG/M
Scaffold IDGa0190271_10658927 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1168
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)41.109Long. (o)-111.7531Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068786Metagenome / Metatranscriptome124Y
F093804Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0190271_106589272F068786AGTAGMSEKKTDLVNSSEVKVMTEKGKDFIDIDVNRLQEQKFYRVEYEGDVYALEKLPDGKIVFYEVVE
Ga0190271_106589273F093804AGGTGGMANNSEAKPVDDLHNRSLKKIGELDPKTFESNMEKEIEIKSEKKQKVEKWHVYLDPNTGHLRKWKGTN

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