Scaffold Ga0066667_10001692

Overview

Basic Information

• Taxon OID: 3300018433
• Scaffold ID: Ga0066667_10001692
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8409
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019111	Metagenome	231	Y
F039071	Metagenome	164	Y
F073377	Metagenome / Metatranscriptome	120	Y
F088665	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066667_1000169210	F039071	AGGA	VLGMAEEALGIGQRDELLANIRRLSRIVLDRLEQGSKEGTLDQAQIRLLGSIAMKSLGLWQEALNPRPRRGLRKEVRDIEDGISDENAGRSSG
Ga0066667_100016923	F073377	GGA	MALFGTVMALVLTLAVVAPVFGAPPAGIPPSHQAQGHHRAPLLATGTTLTISGSGTAYKIGNRTITEGASVSLTATVVKSSPGRAMLNFTGGTLTIGSDTYTVVSGHGVINHAHKMILHIVVKNSAGATFRLILHGDHAKPSSTTAFNVDFRMPQSKLTHLWFLNFP
Ga0066667_100016927	F088665	GAG	MMQSSEPKSKRPIGVSTIAIVALAGGLLSLYGGASVLAGNATGPFTLAIIVVVFGILGLAIGAGFYTGARWAWMAGIIIYIISIGLGIAEIFYGGNVGFVGGIIRILAGIIIPAYLTRRKPKSFFGKGVSSPGR
Ga0066667_100016929	F019111	GGA	MGFPMKMLDGVVGRLGEQGERDENDLRSGIIDQLEQSLTLSQEMMTNLKLDPKTRERWTQLHTNTAQVLNQVLRDKQYRDWEKRLKELEAAGRIPRKTVWSRDTSSEDNGRSVSL