Metagenome / Metatranscriptome Family F088665

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088665
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	98 residues
Representative Sequence	AIIVVIFGILGLALGAGFYTGARWAWMAGIIIYIISIGLGIAEILYGGSVGFVGGIIRILAGIIIPAYLTRQKPKSFFGKSRSSPSM
Number of Associated Samples	80
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Archaea
% of genes with valid RBS motifs	20.18 %
% of genes near scaffold ends (potentially truncated)	70.64 %
% of genes from short scaffolds (< 2000 bps)	70.64 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Archaea (89.908 % of family members)
NCBI Taxonomy ID	2157
Taxonomy	All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (31.193 % of family members)
Environment Ontology (ENVO)	Unclassified (69.725 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (72.477 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.74% β-sheet: 0.00% Coil/Unstructured: 38.26%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF07978	NIPSNAP	16.51
PF07690	MFS_1	9.17
PF06197	DUF998	6.42
PF03237	Terminase_6N	3.67
PF01849	NAC	2.75
PF00230	MIP	2.75
PF07837	FTCD_N	2.75
PF00248	Aldo_ket_red	1.83
PF01022	HTH_5	1.83
PF10437	Lip_prot_lig_C	0.92
PF01844	HNH	0.92
PF01370	Epimerase	0.92
PF02002	TFIIE_alpha	0.92
PF13596	PAS_10	0.92
PF02678	Pirin	0.92
PF06745	ATPase	0.92
PF01638	HxlR	0.92
PF02749	QRPTase_N	0.92
PF13414	TPR_11	0.92
PF00828	Ribosomal_L27A	0.92
PF13401	AAA_22	0.92
PF08327	AHSA1	0.92
PF01966	HD	0.92
PF13580	SIS_2	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG3371	Uncharacterized membrane protein	Function unknown [S]	6.42
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	2.75
COG1308	Transcription factor homologous to NACalpha-BTF3	Transcription [K]	2.75
COG3643	Glutamate formiminotransferase	Amino acid transport and metabolism [E]	2.75
COG0157	Nicotinate-nucleotide pyrophosphorylase	Coenzyme transport and metabolism [H]	0.92
COG1488	Nicotinic acid phosphoribosyltransferase	Coenzyme transport and metabolism [H]	0.92
COG1675	Transcription initiation factor IIE, alpha subunit	Transcription [K]	0.92
COG1727	Ribosomal protein L18E	Translation, ribosomal structure and biogenesis [J]	0.92
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.92
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	89.91 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	10.09 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	16.51 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Bathyarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	14.68 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.83 %
Crenarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota	1.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Bathyarchaeota	no rank	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota	14.68 %
Thermoprotei	class	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei	1.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	14.68 %
Thermofilales	order	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermofilales	1.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.83 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	14.68 %
Thermofilaceae	family	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermofilales → Thermofilaceae	1.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.83 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	14.68 %
Thermofilum	genus	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermofilales → Thermofilaceae → Thermofilum	1.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.83 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	0.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	14.68 %
Thermofilum adornatum	species	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermofilales → Thermofilaceae → Thermofilum → Thermofilum adornatum	1.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.83 %
Actinoplanes globisporus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes globisporus	0.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002558\|JGI25385J37094_10059211	All Organisms → cellular organisms → Archaea	1257	Open in IMG/M
3300002558\|JGI25385J37094_10179345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes globisporus	567	Open in IMG/M
3300002560\|JGI25383J37093_10001266	All Organisms → cellular organisms → Archaea	6916	Open in IMG/M
3300002560\|JGI25383J37093_10004286	All Organisms → cellular organisms → Bacteria	4414	Open in IMG/M
3300002560\|JGI25383J37093_10084985	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	952	Open in IMG/M
3300002561\|JGI25384J37096_10015476	All Organisms → cellular organisms → Archaea	2951	Open in IMG/M
3300002562\|JGI25382J37095_10042381	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1772	Open in IMG/M
3300002908\|JGI25382J43887_10267167	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	775	Open in IMG/M
3300002912\|JGI25386J43895_10058274	All Organisms → cellular organisms → Archaea	1087	Open in IMG/M
3300005167\|Ga0066672_10986581	All Organisms → cellular organisms → Archaea	515	Open in IMG/M
3300005171\|Ga0066677_10259872	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	987	Open in IMG/M
3300005178\|Ga0066688_10884776	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermofilales → Thermofilaceae → Thermofilum → Thermofilum adornatum	552	Open in IMG/M
3300005178\|Ga0066688_10996835	All Organisms → cellular organisms → Archaea	511	Open in IMG/M
3300005180\|Ga0066685_10941114	All Organisms → cellular organisms → Archaea	575	Open in IMG/M
3300005446\|Ga0066686_10897222	All Organisms → cellular organisms → Archaea	582	Open in IMG/M
3300005446\|Ga0066686_10899369	All Organisms → cellular organisms → Bacteria → Proteobacteria	581	Open in IMG/M
3300005450\|Ga0066682_10462556	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	805	Open in IMG/M
3300005450\|Ga0066682_10924161	All Organisms → cellular organisms → Archaea	518	Open in IMG/M
3300005451\|Ga0066681_10170021	All Organisms → cellular organisms → Bacteria → Proteobacteria	1291	Open in IMG/M
3300005518\|Ga0070699_101364682	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermofilales → Thermofilaceae → Thermofilum → Thermofilum adornatum	650	Open in IMG/M
3300005536\|Ga0070697_100010253	All Organisms → cellular organisms → Archaea	7301	Open in IMG/M
3300005552\|Ga0066701_10040072	All Organisms → cellular organisms → Archaea	2507	Open in IMG/M
3300005558\|Ga0066698_10000034	All Organisms → cellular organisms → Archaea	35649	Open in IMG/M
3300005559\|Ga0066700_11144416	All Organisms → cellular organisms → Archaea	508	Open in IMG/M
3300005561\|Ga0066699_10618950	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	777	Open in IMG/M
3300006032\|Ga0066696_10255191	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300006034\|Ga0066656_10000092	All Organisms → cellular organisms → Archaea	26184	Open in IMG/M
3300006046\|Ga0066652_101449212	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	640	Open in IMG/M
3300006791\|Ga0066653_10047384	All Organisms → cellular organisms → Archaea	1775	Open in IMG/M
3300006791\|Ga0066653_10071805	All Organisms → cellular organisms → Archaea	1501	Open in IMG/M
3300006794\|Ga0066658_10000238	All Organisms → cellular organisms → Archaea	20257	Open in IMG/M
3300006796\|Ga0066665_10074876	All Organisms → cellular organisms → Bacteria	2414	Open in IMG/M
3300006796\|Ga0066665_10323141	All Organisms → cellular organisms → Archaea	1249	Open in IMG/M
3300006796\|Ga0066665_11054182	All Organisms → cellular organisms → Archaea	621	Open in IMG/M
3300006796\|Ga0066665_11438311	All Organisms → cellular organisms → Archaea	535	Open in IMG/M
3300007258\|Ga0099793_10109840	All Organisms → cellular organisms → Archaea	1282	Open in IMG/M
3300007265\|Ga0099794_10282491	All Organisms → cellular organisms → Archaea	858	Open in IMG/M
3300009012\|Ga0066710_104182346	All Organisms → cellular organisms → Archaea	539	Open in IMG/M
3300009090\|Ga0099827_10831905	All Organisms → cellular organisms → Archaea	799	Open in IMG/M
3300009137\|Ga0066709_100018603	All Organisms → cellular organisms → Archaea	6862	Open in IMG/M
3300009137\|Ga0066709_100286898	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2227	Open in IMG/M
3300010127\|Ga0127489_1160602	All Organisms → cellular organisms → Archaea	634	Open in IMG/M
3300010301\|Ga0134070_10066662	All Organisms → cellular organisms → Archaea	1226	Open in IMG/M
3300010301\|Ga0134070_10082725	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1106	Open in IMG/M
3300010304\|Ga0134088_10034655	All Organisms → cellular organisms → Archaea	2287	Open in IMG/M
3300010304\|Ga0134088_10057065	All Organisms → cellular organisms → Archaea	1800	Open in IMG/M
3300010329\|Ga0134111_10050114	All Organisms → cellular organisms → Archaea	1514	Open in IMG/M
3300010333\|Ga0134080_10398277	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	636	Open in IMG/M
3300010336\|Ga0134071_10214325	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	952	Open in IMG/M
3300010336\|Ga0134071_10286150	All Organisms → cellular organisms → Archaea	826	Open in IMG/M
3300010361\|Ga0126378_12732060	All Organisms → cellular organisms → Archaea	564	Open in IMG/M
3300012189\|Ga0137388_11143443	All Organisms → cellular organisms → Archaea	715	Open in IMG/M
3300012199\|Ga0137383_10013208	All Organisms → cellular organisms → Archaea	5591	Open in IMG/M
3300012199\|Ga0137383_10036538	All Organisms → cellular organisms → Archaea	3478	Open in IMG/M
3300012201\|Ga0137365_10085018	All Organisms → cellular organisms → Archaea	2383	Open in IMG/M
3300012206\|Ga0137380_10877561	All Organisms → cellular organisms → Archaea	771	Open in IMG/M
3300012207\|Ga0137381_10958690	All Organisms → cellular organisms → Archaea	738	Open in IMG/M
3300012209\|Ga0137379_10087036	All Organisms → cellular organisms → Archaea	3005	Open in IMG/M
3300012209\|Ga0137379_11542569	All Organisms → cellular organisms → Archaea	564	Open in IMG/M
3300012211\|Ga0137377_10030497	All Organisms → cellular organisms → Archaea	4883	Open in IMG/M
3300012211\|Ga0137377_10171321	All Organisms → cellular organisms → Archaea	2083	Open in IMG/M
3300012211\|Ga0137377_10940767	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	795	Open in IMG/M
3300012349\|Ga0137387_10120283	All Organisms → cellular organisms → Archaea	1850	Open in IMG/M
3300012351\|Ga0137386_10429809	All Organisms → cellular organisms → Archaea	951	Open in IMG/M
3300012354\|Ga0137366_10706095	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	719	Open in IMG/M
3300012356\|Ga0137371_10064719	All Organisms → cellular organisms → Archaea	2831	Open in IMG/M
3300012359\|Ga0137385_10005127	All Organisms → cellular organisms → Bacteria	11484	Open in IMG/M
3300012359\|Ga0137385_10702182	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	845	Open in IMG/M
3300012362\|Ga0137361_10546311	All Organisms → cellular organisms → Archaea	1063	Open in IMG/M
3300012918\|Ga0137396_10045073	All Organisms → cellular organisms → Bacteria	2999	Open in IMG/M
3300012918\|Ga0137396_10547046	All Organisms → cellular organisms → Archaea	857	Open in IMG/M
3300012927\|Ga0137416_10492133	All Organisms → cellular organisms → Archaea	1055	Open in IMG/M
3300012971\|Ga0126369_12303725	All Organisms → cellular organisms → Archaea	625	Open in IMG/M
3300012972\|Ga0134077_10488067	All Organisms → cellular organisms → Archaea	544	Open in IMG/M
3300012976\|Ga0134076_10474199	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	568	Open in IMG/M
3300012977\|Ga0134087_10129739	All Organisms → cellular organisms → Archaea	1081	Open in IMG/M
3300014157\|Ga0134078_10175230	All Organisms → cellular organisms → Archaea	859	Open in IMG/M
3300015358\|Ga0134089_10125221	All Organisms → cellular organisms → Archaea	1001	Open in IMG/M
3300015359\|Ga0134085_10622704	All Organisms → cellular organisms → Archaea	503	Open in IMG/M
3300017654\|Ga0134069_1072835	All Organisms → cellular organisms → Archaea	1100	Open in IMG/M
3300017654\|Ga0134069_1097682	All Organisms → cellular organisms → Archaea	956	Open in IMG/M
3300017656\|Ga0134112_10042328	All Organisms → cellular organisms → Archaea	1632	Open in IMG/M
3300017656\|Ga0134112_10354238	All Organisms → cellular organisms → Archaea	599	Open in IMG/M
3300018431\|Ga0066655_10154801	All Organisms → cellular organisms → Archaea	1366	Open in IMG/M
3300018431\|Ga0066655_11112328	All Organisms → cellular organisms → Archaea	553	Open in IMG/M
3300018433\|Ga0066667_10001692	All Organisms → cellular organisms → Archaea	8409	Open in IMG/M
3300018433\|Ga0066667_11642772	All Organisms → cellular organisms → Archaea	574	Open in IMG/M
3300018433\|Ga0066667_11937870	All Organisms → cellular organisms → Archaea	539	Open in IMG/M
3300018433\|Ga0066667_12222308	All Organisms → cellular organisms → Archaea	511	Open in IMG/M
3300018482\|Ga0066669_10002599	All Organisms → cellular organisms → Archaea	7495	Open in IMG/M
3300026277\|Ga0209350_1036404	All Organisms → cellular organisms → Archaea	1454	Open in IMG/M
3300026296\|Ga0209235_1000103	All Organisms → cellular organisms → Archaea	36060	Open in IMG/M
3300026296\|Ga0209235_1000247	All Organisms → cellular organisms → Archaea	26485	Open in IMG/M
3300026298\|Ga0209236_1007315	All Organisms → cellular organisms → Bacteria	6641	Open in IMG/M
3300026317\|Ga0209154_1304053	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	525	Open in IMG/M
3300026323\|Ga0209472_1222737	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	615	Open in IMG/M
3300026325\|Ga0209152_10000250	All Organisms → cellular organisms → Archaea	27297	Open in IMG/M
3300026327\|Ga0209266_1024953	All Organisms → cellular organisms → Archaea	3249	Open in IMG/M
3300026327\|Ga0209266_1100195	All Organisms → cellular organisms → Archaea	1268	Open in IMG/M
3300026329\|Ga0209375_1005508	All Organisms → cellular organisms → Bacteria	8418	Open in IMG/M
3300026329\|Ga0209375_1062876	All Organisms → cellular organisms → Archaea	1792	Open in IMG/M
3300026332\|Ga0209803_1004114	All Organisms → cellular organisms → Archaea	8600	Open in IMG/M
3300026333\|Ga0209158_1175618	All Organisms → cellular organisms → Archaea	772	Open in IMG/M
3300026536\|Ga0209058_1001463	All Organisms → cellular organisms → Archaea	20131	Open in IMG/M
3300026537\|Ga0209157_1003854	All Organisms → cellular organisms → Archaea	11371	Open in IMG/M
3300028536\|Ga0137415_10252234	All Organisms → cellular organisms → Archaea	1573	Open in IMG/M
3300031720\|Ga0307469_11023108	All Organisms → cellular organisms → Archaea	772	Open in IMG/M
3300031820\|Ga0307473_11281202	All Organisms → cellular organisms → Archaea	548	Open in IMG/M
3300032205\|Ga0307472_102110998	All Organisms → cellular organisms → Archaea	567	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	97.25%
Loam	Environmental → Terrestrial → Soil → Loam	2.75%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	52.29%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.20%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	31.19%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	22.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	21.10%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	17.43%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.75%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010127	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25385J37094_100592112	3300002558	Grasslands Soil	MATGPFVLAVVVIIFGIFGLALGAGLYTGMGWAWMAGIIIYIVSIGLGVAEIVYGGMVGGIGGIIRIVAGVVIPAYLTRQNVKIFFGKSSPSPGPQT*
JGI25385J37094_101793451	3300002558	Grasslands Soil	LSLFGGASVLAGMASGPLALAIIVIIFGILGLALGAGFFTGARWAWMAGIIIYIISIGLGIAEIFYGGNVGLIGGIIRTIAGIVIPVYLTRQKLRNFFGKGSTSPSK*
JGI25383J37093_100012662	3300002560	Grasslands Soil	MMQSSEPKSKRPIGVSTIAIVALAGGLLSLYGGASVLAGNATGPFALAIIVVVFGILGLAIGAGFYTGARWAWMAGIIIYIISIGLGIAEIFYGGNVGFVGGIIRILAGIIIPAYLTRRKPKSFFGKGVSSPGR*
JGI25383J37093_100042861	3300002560	Grasslands Soil	VIGAIAFAGGLLSLFGAASVFSGNATGPTWLAIVVVVFGLLGLSLGVGFYTGARWAWMGGIVSYIISILLGILEIVYGGTIGGVGGVIRIVAGIVIP
JGI25383J37093_100849851	3300002560	Grasslands Soil	ILGLAVGAGFFTGAKRAWMAGVVTYIISIGLGIXEIVYGGQVGFIGGIIRTLAGIILPVYLMRPGPKSFFGKVSSAAKR*
JGI25384J37096_100154761	3300002561	Grasslands Soil	VIGAIAFAGGLLSLFGAASVFSGNATGPTWLAIVVVVFGLLGLSLGVGFYTGARWAWMGGIVIYIISILLGILEIVYGGTIGGVGGVIRIVAGIVIPL
JGI25382J37095_100423812	3300002562	Grasslands Soil	MASGPLALAIIVIIFGILGLALGAGFFTGARWAWMAGIIIYIISIGLGIAEIFYGGNVGLIGGIIRTIAGIVIPVYLTRQKLRNFFGKGSTSPSK*
JGI25382J43887_102671671	3300002908	Grasslands Soil	LSLYGGASVLAGNATGPFALAIIVVVFGILGLAIGAGFYTGARWAWMAGIIIYIISIGLGIAEIFYGGNVGFVGGIIRILAGIIIPAYLTRRKPKSFFGKGVSSPGR*
JGI25386J43895_100582742	3300002912	Grasslands Soil	GLLSLYGGASVLAGNATGPFALAIIVVVFGILGLAIGAGFYTGARWAWMAGIIIYIISIGLGIAEIFYGGNVGFVGGIIRILAGIIIPAYLTRRKPKSFFGKGVSSPGR*
Ga0066672_109865812	3300005167	Soil	ASGPFSLAIIVIIFGILGLALGAGFYTGARWAWMAGIIIYVISIGLGISEIVYGGNVGFIGGIIRTIAGIVIPVYFTRPGPKSFFGKGASSPTK*
Ga0066677_102598722	3300005171	Soil	LGLALGAGFYTGARWAWMAGIIIYVISIGLGISEIVYGGNVGFIGGIIRTIAGIVIPVYFTRPGPKSFFGKGASSPTK*
Ga0066688_108847761	3300005178	Soil	FANRLIISPRNRDMMQSSEPKSKRPIGVSTIAIVALAGGLLSLYGGASVLAGNATGPFALAIIVVVFGILGLAIGAGFYTGARWAWMAGIIIYIISIGLGIAEIFYGGNVGFVGGIIRILAGIIIPAYLTRRKPKSFFGKGVSSPGR*
Ga0066688_109968352	3300005178	Soil	AYIVIIFGVLGLALGAGFYTGARWAWMAGIIIYILSIGLGIAEILYGGNVGLIGGIIRTIAGIVIPVYLTRPGPKSSFGKGASSPSK*
Ga0066685_109411142	3300005180	Soil	IAAAGGLLSLFGAASVFSGNATGPTWLAIVVVVFGILGLSLGVGFYTGAHWAWMEGIVIYIISIVLGILEILYGGSVGGIGGIIRIIAGIVIPLYLTRADPRSFFGRTGTPSKP*
Ga0066686_108972222	3300005446	Soil	ASVLAGTATGPFAIAIIVVIFGILGLALGAGFYTGARWAWMAGIIIYIISIGLGIAEILYGGSVGFVGGIIRTIAGIIIPAYLTRQKPKSFFGKSRSSPSM*
Ga0066686_108993691	3300005446	Soil	LFGAASAFSGNATGPTWLAIVVTIFGILGLTLGVGFYTGARWAWMGGIVIYIISILLGILEILYGGTVGGVGGVIRIVAGIIIPLYL
Ga0066682_104625562	3300005450	Soil	VIFGILGLALGAGFYTGARWAWMAGIIIYIISIGLGIAEILYGGSVGFVGGIIRILAGIIIPAYLTRQKPKSFFGKSRSSPSM*
Ga0066682_109241612	3300005450	Soil	TGPFAIAIIVVIFGILGLALGAGFYTGARWAWMAGIIIYIVSIGLGIAEILYGGTVGFVGGIIRIIAGIIIPAYLTRQKPKSFFGKSRS*
Ga0066681_101700211	3300005451	Soil	LALGAGFYTGARWAWMAGIIIYIISIGLGIAEILYGGSVGFVGGIIRIIAGIIIPAYLTRQKPKSFFGKSRSSPSM*
Ga0070699_1013646821	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VGVTAISIVAAAGGLLSLFGAAPRLAGMGAGPVELAYIVIIFGVLGLLLGAGFFTGAKWAWMADVIIYILSIGLGIAEILYGGQVGLIGGIVRTIAGIVIPIYLTRPKSKAFFSKGTTGPGK*
Ga0070697_1000102537	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	LSLFGGASVLAGMASGPVALAYIVILFGILGLGLGAGFFTGAKWAWMAGVIIYIMSIGLGIAEIVYGGNVGLIGGIIRTVAGIVIPVYLTRPKTKSFFGKGAGSPTT*
Ga0066701_100400724	3300005552	Soil	LLSLYGGASVLAGNATGPFALAIIVVVFGILGLAIGAGFYTGARWAWMAGIIIYIISIGLGIAEIFYGGNVGFVGGIIRILAGIIIPAYLTRRKPKSFFGKGVSSPGR*
Ga0066698_100000344	3300005558	Soil	LSGMATGPFVLAVVVIIFGIFGLALGAGLYTGMGWAWMAGIIIYIVSIGLGVAEIVYGGMVGGIGGIIRIVAGVVIPAYLTRQNVKIFFGKSSPSPGPQT*
Ga0066700_111444161	3300005559	Soil	GGLLSLFGAASIFSGNATGPTWLAIVVVFFGILGLSLGVGFYTGTRWAWMGGIVIYIVSILLGILEILYGGTVGGIGGVIRMVAGIVIPLYLTRAGPKSFFGKGRAAHSS*
Ga0066699_106189501	3300005561	Soil	LGLALGAGFYTGAKWSWMAGIIIYIISIGLGIAEIIYGGNVGFIGGIIRTIAGIVIPVYLTRPCPKSFFGKGASSPGK*
Ga0066696_102551913	3300006032	Soil	VVVFGILGLAIATGFYTGARWAWMAGIVIYIVSIGLGIAEILYGGSVGFVGGIIRILAGIIIPVYLTRQKPRNFLGKSTTPPST*
Ga0066656_1000009210	3300006034	Soil	LSGMATGPFVLAVVVIIFGIFGLALGAGLYTGMGWAWMAGIIIYIVSIGLGVAEIVYGGMVGRIGGIIRIVAGVVIPAYLTRQKRQDLLRQEFTFTRPSNLTL*
Ga0066652_1014492122	3300006046	Soil	LAIIVVVFGILGLAIATGFYTGARWAWMAGIVIYIVSIGLGIAEILYGGSVGFVGGIIRILAGIIIPVYLTRRKPRSFFGKSTTLPST*
Ga0066653_100473843	3300006791	Soil	AIIVVIFGILGLALGAGFYTGARWAWMAGIIIYIISIGLGITEILYGGSVGFVGGIIRILAGIIIPVYLTRQKPKSFFGKGVSSPGP*
Ga0066653_100718054	3300006791	Soil	AIIVVIFGILGLALGAGFYTGARWAWMAGIIIYIISIGLGIAEILYGGSVGFVGGIIRILAGIIIPAYLTRQKPKSFFGKSRSSPSM*
Ga0066658_1000023820	3300006794	Soil	LFGAASIFSGNATGPTWLAIVVVFFGILGLSLGVGFYTGTRWAWMGGIVIYIVSILLGILEILYGGTVGGIGGVIRMVAGIVIPLYLTRAGPKSFFGKGRAAHSS*
Ga0066665_100748764	3300006796	Soil	LLSLFGAASVFSGNGTGPTWLAIAVLIFGILGLLLGVGFYTGARWAWMGGIVIYVVSILLGILEIVYGGTVGGIGGVIRIAAGIVIPLYLTRAGPRSFFGKGLVSPAHSS*
Ga0066665_103231413	3300006796	Soil	ASVLAGTATGPFAIAIIVVIFGILGLALGAGFYTGARWAWMAGIIIYIISIGLGIAEILYGGSVGFVGGIIRILAGIIIPVYLTRQKPKSFFGKSRSSPSM*
Ga0066665_110541822	3300006796	Soil	LLSLYGGASVLAGNATGPFALAIMVVVFGILGLAIATGFYTGARWAWMAGIVIYIVSIGLGIAEILYGGSVGFVGGIIRILAGIIIPVYLTRRKPRSFFGKSTTLPST*
Ga0066665_114383112	3300006796	Soil	VGGLLSLFGGASVLAGTATGPFAIAIIVVIFGILGLALGAGFYTGARWAWMAGIVIYIISIGLGIAEILYGGSVGFVGGIIRTIAGIIIPAYLTRQKPKSFFGKSRSSPSM*
Ga0099793_101098401	3300007258	Vadose Zone Soil	GAASVFSGNATGPTWLAIVVTIFGILGLALGIGFYSGAGWARMAGIAIYLVSILLGILEIVYGGTVGGVGGVIRIVAGIVIPLYLTRGGPKKFFRKEPVSTSS*
Ga0099794_102824911	3300007265	Vadose Zone Soil	LSLFGAASVFAGSATGPTWLAIVVTIFGILGLALGVGFYTGARWAWMGGIVIYIVSILLGILEIVYGGTIGGVGGVIRIVAGIIIPSYLTLAGPKKFFGKTPASPSP*
Ga0066710_1041823461	3300009012	Grasslands Soil	AASVFSGNGTGPTWLAIVVVIFGILGLTLGIGFYTGTRRAWMGGIVIYIVSILLGILEIVYGGTVGGVGGVIRIAAGVVIPLYLTRAGPKTFFGKTPASHTS
Ga0099827_108319051	3300009090	Vadose Zone Soil	LSLFGAASVFAGSATGPTWLAIVVTIFGILGLALGVGFYTGARWAWMGGILVYIVSILLGILEIVYGGTIGGVGGVIRILAGIVIPLYLTRAGTKKFFGKTPASPSP*
Ga0066709_1000186038	3300009137	Grasslands Soil	MATGPFVLAVVVIIFGIFGLALGAGLYTGMGWAWMAGIIIYIVSIGLGVAEIVYGGMVGRIGGIIRIVAGVVIPAYLTRQKRQDLLRQEFTFTRPSNLTL*
Ga0066709_1002868982	3300009137	Grasslands Soil	MGAGPVELAYIVIIFGVLGLALGAGFYTGARWAWMAGIIIYILSIGLGIAEILYGGNVGLIGGIIRTIAGIVIPVYLTRPGPKSSFGKGASSPSK*
Ga0127489_11606022	3300010127	Grasslands Soil	IFGILGLALGAGFYTGARWAWMTGIVIYIVSIGLGIAEILYGGSVGFVGGIIRILAGIIIPVYLTRQKPRNFLGKSTTPPST*
Ga0134070_100666621	3300010301	Grasslands Soil	GLALGAGFYTGARWAWMAGIIIYIISIGLGIAEILYGGSVGFVGGIIRILAGIIIPAYLTRQGPRSFFGKSTTLPST*
Ga0134070_100827252	3300010301	Grasslands Soil	GLALGAGFYTGARWAWMAGIIIYIISIGLGIAEILYGGSVGFVGGIIRIIAGIIIPAYLTRQKPKSFFGKSRS*
Ga0134088_100346551	3300010304	Grasslands Soil	VVAAAGGLLSLFGAASAFSGNATGPTWLAIVVVVFGILGLSLGVGFYTGAHWAWIGGIVIYVISILLGILEILYGGTIGGIGGVIRIIAGIVIPLYLTRAGPKSFFGRTGAPSKP*
Ga0134088_100570654	3300010304	Grasslands Soil	VFGILGLAIATGFYTGARWAWMAGIVIYIVSIGLGIAEILYGGSVGFVGGIIRILAGIIIPVYLTRRKPRSFFGKSTTLPST*
Ga0134111_100501143	3300010329	Grasslands Soil	GLALGAGFYTGARWAWMAGIIIYIISIGLGIAEILYGGSVGFVGGIIRIIAGIIIPAYLTRQKPKSFFGKSRSSPSM*
Ga0134080_103982772	3300010333	Grasslands Soil	GILGLALGARFYTGARWAWMAGIIIYIVSIGLGIAEIVYGGNVGFIGGIIRTIAGIVIPVYLTRPGPKRFFGKGASSPTK*
Ga0134071_102143251	3300010336	Grasslands Soil	IIAFVAAAGGLLSLYGGASVLAGNATGPFALAIIVVVFGILGLAIATGFYTGARWAWMAGIVIYIVSIGLGIAEILYGGSVGFVGGIIRILAGIIIPVYLTRRKPRSFFGKSTTLPST*
Ga0134071_102861502	3300010336	Grasslands Soil	ALAIIVIMFGILGLALGAGFYTGAKWAWMTGIMIYIISIGLGIAEILYGGDVGLIGGIIRTIAGIVIPVYLTRPKPKSFFGKSASWPNK*
Ga0126378_127320601	3300010361	Tropical Forest Soil	LIAIIAAAGGVLSLFGGAMVLSGMASGPLILAYAVIVFGILGLVLGTGFFIGAKWAWPSGFTIYIASVGLGVAEIVYGGNVGFLGGIIRVIAGILIPAYLTMKGPKAFFGKS*
Ga0137388_111434431	3300012189	Vadose Zone Soil	AIVAAAGGLLSLFGGASRLAGMGTGPIELAYIVIIFGVLGLALGAGFYTGAKWAWMAGIIIYVISIGLGIAEILYGGNVGFIGGIIRIIAGVVIPIYLTRPKPKSFFGKGASSPSK*
Ga0137383_100132083	3300012199	Vadose Zone Soil	MGTGPVELAYIVIIFGVLGLALGAGFHTGARWAWMAGIIIYIISIGLGVAEILYGGSVGLIGGIIRTIAGVVIPIYLTRPKPISFFGKGASSASK*
Ga0137383_100365382	3300012199	Vadose Zone Soil	MTFGILGLILGAGFYTGAGWAWMAGLVIYFVSIGLGIAEIVYGGRVGFIGGIIRLLAGIVIPIYLTRSGPKDFFVKTKDLT*
Ga0137365_100850182	3300012201	Vadose Zone Soil	MTFRILGLILGAGFYTGAGWAWMAGLVIYFVSIGLGIAEIVYGGRVGFIGGIIRLLAGIVIPIYLTRSGPKDFFVKTKDLT*
Ga0137380_108775611	3300012206	Vadose Zone Soil	MASGPFVLAIIVIIFGILGLTLGAGFFTGARWPWMAGIIIYVISIGLGISEIVYGGNVGFIGGIIRTIAGIVIPVYLTRPSPKSFFGKGASSPSK*
Ga0137381_109586901	3300012207	Vadose Zone Soil	GAASVFAGSATGPTWLAIVVTIFGIFGLALGVGFYTGARWAWMGGILIYIVSIVLGILEIVYGGTIGGVGGVIRILAGIVIPLYLTRVGTKKFFGKTPASPSP*
Ga0137379_100870363	3300012209	Vadose Zone Soil	LAFALGGGFFTGVKWAWMAGIIIYIVSIGLGIAEIIYGGNVGQIGGIIRTLAGIILPVYLLRPGPKSFFGKGSGSTGT*
Ga0137379_115425691	3300012209	Vadose Zone Soil	ILGLILGAGFYTGAGWAWMAGLVIYFVSIGLGIAEIVYGGRVGFIGGIIRLLAGIVIPIYLTRSGPKDFFVKTKDLT*
Ga0137377_100304973	3300012211	Vadose Zone Soil	MVTSQSTPKRQIGITIIAIIAAAGGLLSLFGGASVLAGNATGPFALAIIVVVFGILGLAIGAGFYTGARWAWMAGIGIYIVSIGLGIAEIFYGGSVGFVGGIIRIFAGIIIPVYLTRQRPKSFFGKGVSSPGG*
Ga0137377_101713215	3300012211	Vadose Zone Soil	SVFAGSATGPTWLAIVVTIFGIFGLALGVGFYTGARWAWMGGILIYIVSIVLGILEIVYGGTIGGVGGVIRILAGIVIPLYLTRVGTKKFFGKTPASPSP*
Ga0137377_109407671	3300012211	Vadose Zone Soil	MIIAIVAAAGGILSLFGGASVLAGTASGPFALAIVVIVFGILGLALGAGFFTGAKWAWMAGIIIYIISIGLGIAEILYGGNVGLIGGIIRTIAGIVIPVYLTRP
Ga0137387_101202831	3300012349	Vadose Zone Soil	MMQSSEPKSKRPIGVTIISIVAAAGGLLSLYGGASVLAGNATGPFALAIIVVVFGTLGLALGAGFYTGARWAWMTGIVIYIVSIGLGIAEILYGGSVGFVGGIIRILAGIIIPVYLTRQKPRNFFGKSTTLPST*
Ga0137386_104298091	3300012351	Vadose Zone Soil	MASGPFALAIIVIMFGILGLALGAGFYTGAKWAWMTGIMIYIISIGLGIAEILYGGNVGLIGGIIRTIAGIVIPVYLTRPKPKSFFGKSASSPNK*
Ga0137366_107060951	3300012354	Vadose Zone Soil	GGASVLAGNATGPFALAIIVVVFGILGLVLGAGFYTGARWAWMAGIMIYIISIGLGIAEILYGGNVGLVGGIIRILAGIIIPVYLTREKPKSFFGKGVSSPGP*
Ga0137371_100647193	3300012356	Vadose Zone Soil	MVSSQSKSKRAVGVAIIAVIAAAGGLLSLFGGASVLAGNATGPFALAIIVVTFGILGLALGAGFYIRAGWAWMAGIVIYIISIGLGVAEIIYGGSVGFIGGIIRILAGIIIPAYLTRQGPKHFFGKGASSPSP*
Ga0137385_100051272	3300012359	Vadose Zone Soil	MASGPFALAIIVIMFGILGLALGAGFYTGAKWAWMTGIMIYIISIGLGIAEILYGGDVGLIGGIIRTIAGIVIPVYLTRPKPKSFFGKSASWPNK*
Ga0137385_107021821	3300012359	Vadose Zone Soil	LALGAGFYTGARWAWMAGIIIYIISIGLGIAEVIYGGNVGLIGGVIRTIAGIVIPAYLIRPKPKSFFGKGASSPTK*
Ga0137361_105463112	3300012362	Vadose Zone Soil	IMFGILGLALGAGFYTGAKWAWMTGIIIYIISIGLGIAEILYGGNVGLIGGIIRTIAGIVIPVYLTRPKPKSFFGKSASSPNK*
Ga0137396_100450731	3300012918	Vadose Zone Soil	ILGLALGAGFFTGARWAWMAGITIYIISIGLGIAEIIYGGQVGLIGGIIRTIAGIIIPIYLTRPKPKAFFGKGTIGP*
Ga0137396_105470462	3300012918	Vadose Zone Soil	GPVVLAYIVIIFGILGLTLSVGFFTGAKWAWIAGIVIYIISIGLGIAEIVYGGQVGFIGGIIRTLAGIVIPVYLTRLGPKSFLGKVSSAAKT*
Ga0137416_104921331	3300012927	Vadose Zone Soil	FGILGLALGAGFFTGAKWAWMAGIIIYIISIGLGIAEIIYGGQVGLMGGIIRTIAGIVIPVYLNRPKPKSFFGKGSSSPST*
Ga0126369_123037251	3300012971	Tropical Forest Soil	LIAIIAAAGGVLSLFGGAMVLSGMASGPLILAYAIIVFGILGLVLGTGFFIGAKWAWPSGFTIYIASVGLGVAEIVYGGNVGFLGGIIRVIAGILIPAYLTMKGPKAFFGKS*
Ga0134077_104880672	3300012972	Grasslands Soil	TGPFVLAVVVIIFGIFGLALGAGLYTGMGWAWMAGIIIYIVSIGLGVAEIVYGGMVGRIGGIIRIVAGVVIPAYLTRQKRQDLLRQEFTFTRPSNLTL*
Ga0134076_104741991	3300012976	Grasslands Soil	VAIVVITFGILGLALGAGFFTGAKWAWMAGIVIYIISIGLGIAEIIYGGQVGFIGGIIRTLAGIILPVYLMRPGRRASSAKFQALPRNR*
Ga0134087_101297391	3300012977	Grasslands Soil	FGGASVLAGNTTGPFALAIIVVIFGILGLALGAGFYTGARWAWIAGIGIYIVSIGLGIAETLYGGSVGFVGGIIRILAGIIIPVYLTRQKPRNFLGKSTTPPST*
Ga0134078_101752301	3300014157	Grasslands Soil	VLAGNATGPFALAIIVVVFGILGLAIATGFYTGARWAWMAGIVIYIVSIGLGIAEILYGGSVGFVGGIIRVLAGIIIPVYLTRRKPRSFFGKSTTLPST*
Ga0134089_101252211	3300015358	Grasslands Soil	ILGLAIGAGFYTGARWAWMAGIIIYIISIGLGIAEIFYGGNVGFVGGIIRILAGIIIPAYLTRRKPKSFFGKGVSSPGR*
Ga0134085_106227041	3300015359	Grasslands Soil	VLAGMASGPFALAIIVIIFGILGLALGAGFYTGARWAWMAGIIIYIVSIGLGIAEIVYGGNVGFIGGIIRTIAGIVIPVHLTRPGPKSFFGKGASSPSK*
Ga0134069_10728351	3300017654	Grasslands Soil	GLALGAGFYTGARWAWMAGIIIYIISIGLGIAEILYGGSVGFVGGIIRILAGIIIPAYLTRQKPKSFFGKSRSSPSM
Ga0134069_10976821	3300017654	Grasslands Soil	GLALGAGFYTGARWAWMAGIIIYIISIGLGIAEILYGGSVGFVGGIIRILAGIIIPAYLTRQGPRSFFGKSTTLPST
Ga0134112_100423283	3300017656	Grasslands Soil	LSGMATGPFVLAVVVIIFGIFGLALGAGLYTGMGWAWMAGIIIYIVSIGLGVAEIVYGGMVGGIGGIIRIVAGVVIPAYLTRQNVKIFFGKSSPSPGPQA
Ga0134112_103542382	3300017656	Grasslands Soil	MMQSSEPKSKRPIGVSTIAIVALAGGLLSLYGGASVLAGNATGPFALAIIVVVFGILGLAIATVFYTGARWAWMAGIVIYIVSIGLGIAEILYGGSVGFVGGIIRILAGIIIPVYLTRQKPKSFFGKGVSSPGR
Ga0066655_101548011	3300018431	Grasslands Soil	LSGMATGPFVLAVVVIIFGIFGLALGAGLYTGMGWAWMAGIIIYIVSIGLGVAEIVYGGMVGRIGGIIRIVAGVVIPAYLTRQKRQDL
Ga0066655_111123282	3300018431	Grasslands Soil	ASVLAGTATGPFAIAIIVVIFGILGLALGAGFYTGARWAWMAGIIIYIISIGLGIAEILYGGSVGFVGGIIRIIAGIIIPAYLTRQKPKSFFGKSRSSPSM
Ga0066667_100016927	3300018433	Grasslands Soil	MMQSSEPKSKRPIGVSTIAIVALAGGLLSLYGGASVLAGNATGPFTLAIIVVVFGILGLAIGAGFYTGARWAWMAGIIIYIISIGLGIAEIFYGGNVGFVGGIIRILAGIIIPAYLTRRKPKSFFGKGVSSPGR
Ga0066667_116427721	3300018433	Grasslands Soil	LFGAASVFSGNATGPTWLAIVVTIFGILGLTLGVGFYTGARWAWMGGIVIYIVSILLGILEILNGGTVGGVGGVIRIVAGITISPSLAGP
Ga0066667_119378701	3300018433	Grasslands Soil	IAIVATAGGLLSIFGGASRLAGMGAGPVELAYIVIIFGVLGLALGAGFYTGARWAWMAGIIIYILSIGLGIAEILYGGNVGLIGGIIRTIAGIVIPVYLTRPGPKSSFGKGASSPSK
Ga0066667_122223081	3300018433	Grasslands Soil	LALGAGLYTGMGWAWMAGIIIYIVSIGLGVAEIVYGGMVGGIGGIIRIVAGVVIPAYLTRQNVKIFFGKSSPSPGPQT
Ga0066669_100025998	3300018482	Grasslands Soil	VLAGMASGPFALAIIVIIFGILGLALGAGFYTGARWAWMAGIIIYIVSIGLGIAEIVYGGNVGFIGGIIRTIAGIVIPVYL
Ga0209350_10364042	3300026277	Grasslands Soil	MMQSSEPKSKRPIGVSTIAIVALAGGLLSLYGGASVLAGNATGPFALAIIVVVFGILGLAIGAGFYTGARWAWMAGIIIYIISIGLGIAEIFYGGNVGFVGGIIRILAGIIIPAYLTRRKPKSFFGKGVSSPGR
Ga0209235_100010313	3300026296	Grasslands Soil	LLSLYGGASVLAGNATGPFALAIIVVVFGILGLAIGAGFYTGARWAWMAGIIIYIISIGLGIAEIFYGGNVGFVGGIIRILAGIIIPAYLTRRKPKSFFGKGVSSPGR
Ga0209235_100024732	3300026296	Grasslands Soil	LSGMATGPFVLAVVVIIFGIFGLALGAGLYTGMGWAWMAGIIIYIVSIGLGVAEIVYGGMVGGIGGIIRIVAGVVIPAYLTRQNVKIFFGKSSPSPGPQT
Ga0209236_10073151	3300026298	Grasslands Soil	GASVLSGMASGPFAVAIIVIMFGILGLALGAGFYTGAKWAWMTGIIIYIISIGLGIAEILYGGNVGLIGGIIRTIAGIVIPVYLTRPKPKSFFGKSASWPNK
Ga0209154_13040531	3300026317	Soil	GLALGAGFYTGAKWAWVAGIIIYVISIGLGISEIVYGGNVGFIGGIIRTIAGIVIPIYLTRPGPKSFFGKGASSPTK
Ga0209472_12227371	3300026323	Soil	LGLALGAGFYTGARWAWMAGIIIYIISIGLGIAEILYGGSVGFVGGIIRIIAGIIIPAYLTRQKPKSFFGKSRSSPSM
Ga0209152_100002507	3300026325	Soil	LFGAASIFSGNATGPTWLAIVVVFFGILGLSLGVGFYTGTRWAWMGGIVIYIVSILLGILEILYGGTVGGIGGVIRMVAGIVIPLYLTRAGPKSFFGKGRAAHSS
Ga0209266_10249531	3300026327	Soil	IVVIFGILGLALGAGFYTGARWAWMAGIIIYIISIGLGIAEILYGGSVGFVGGIIRILAGIIIPAYLTRQKPKSFFGKSRSSPSM
Ga0209266_11001951	3300026327	Soil	IVVIFGILGLALGAGFYTGARWAWMAGIIIYIISIGLGIAEILYGGSVGFVGGIIRILAGIIIPAYLTRQGPRSFFGKSTTLPST
Ga0209375_10055087	3300026329	Soil	LGLALGAGFYTGARWAWMAGIIIYIISIGLGIAEILYGGSVGFVGGIIRILAGIIIPAYLTRQGPRSFFGKSTTLPST
Ga0209375_10628764	3300026329	Soil	LGLALGAGFYTGARWAWMAGIIIYIISIGLGIAEILYGGSVGFVGGIIRILAGIIIPVYLTRQKPKSFFGKGVSSPGP
Ga0209803_100411411	3300026332	Soil	LFGAASVFSGNGTGPTWLAIAVLIFGILGLLLGVGFYTGARWAWMGGIVIYVVSILLGILEIVYGGTVGGIGGVIRIAAGIIIPLYLTRAGPRSFFGKGLVSPAHSS
Ga0209158_11756182	3300026333	Soil	LSLFGAASVFSGNGTGPTWLAIAVLIFGILGLLLGVGFYTGARWAWMGGIVIYVVSILLGILEIVYGGTVGGIGGVIRIAAGIIIPLYLTRAGPRSFFGKGLVSPAHSS
Ga0209058_100146317	3300026536	Soil	LSGMATGPFVLAVVVIIFGIFGLALGAGLYTGMGWAWMAGIIIYIVSIGLGVAEIVYGGMVGRIGGIIRIVAGVVIPAYLTRQKRQDLLRQEFTFTRPSNLTL
Ga0209157_10038546	3300026537	Soil	LLSLYGGASVLAGNATGPFALAIIVVVFGILGLAIATGFYTGARWAWMAGIVIYIVSIGLGIAEILYGGSVGFVGGIIRILAGIIIPVYLTRRKPRSFFGKSTTLPST
Ga0137415_102522342	3300028536	Vadose Zone Soil	YIVIIFGILGLTLSVGFFTGAKWAWIAGIVIYIISIGLGIAEIVYGGQVGFIGGIIRTLAGIVIPVYLTRLGPKSFLGKVSSAAKT
Ga0307469_110231081	3300031720	Hardwood Forest Soil	VLAGMASGPVALAYIVIVFGILGLALGAGFFTGAKWAWMAGTIIYIVSIGLGIAEIVYGGNVGLIGGIIRTVAGIVIPVYLTRPKTKSFFGKGIVSTAT
Ga0307473_112812021	3300031820	Hardwood Forest Soil	LSLFGGASVLAGMASGPVALAYIVIVFGILGLALGAGFFTGAKWAWMAGMIVYIMSIGLGIAEIVYGGNVGLIGGIIRTVAGIVIPVYLTRPKTKSFFGKGTGSPAT
Ga0307472_1021109982	3300032205	Hardwood Forest Soil	GNASGPIWLAVVVTIFGILGLALGVGFYTGARWAWMGGIVIYIVSILLGILEIVYGGTVGGIGGVIRITAGIVIPLYLTRTGPKIFFGRGLVPPSA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088665

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences