NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066655_10000415

Scaffold Ga0066655_10000415


Overview

Basic Information
Taxon OID3300018431 Open in IMG/M
Scaffold IDGa0066655_10000415 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13921
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005666Metagenome / Metatranscriptome393Y
F010795Metagenome / Metatranscriptome299Y
F014602Metagenome261Y
F032054Metagenome / Metatranscriptome181Y
F063022Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0066655_1000041512F063022GGAGMFPCLIVDRSQEGFRLRGSFRLKRGQLVEIVLDDPVDSVQCEVEWTGKTELEQVGEVGLQIVGKMTFGLRTRSR
Ga0066655_1000041513F014602AGGMIDSWTKKFPSGKTVTFKIEGDRKSGFVYSAKMDGRDIREITGFLEELTREGVEVMFANYVAGK
Ga0066655_1000041514F010795N/AMMSFRELVVSSYPARANDIVKAVHLLRQHGIAVGFPMQTADGEIIFPVGKDFTLTADQMLELLERGELDAEGVRRSVEAQAATRRRAASS
Ga0066655_1000041515F032054N/AMRTLYDILKKDRKGTFQWLETVKDIETAKARVLQLSSESLDEFIVFRGTDLQVVATSQAMQTDTEVLREFPQQRLQFFAD
Ga0066655_100004156F005666GGAGMKAWTIRISLVVAALMAVCVADVARAQAPLEPAQMSPRTLFYLIWRGVPSPDARKANALLALWDDADFAPVRSAMVAGMLGSSDEKSTQPKLTPEQVQEFAGLLENSFTLGYWSEPTRRNLSNGAAVTEAKVPAWNGMFFVYDRTGKEMLLTKAVLRMRAEEKEAPRLSQVAIAGVQVLKAEGKGGATYWAEHGKFAVSAGEKLVMEDLLSRLDGKISGGASLVQSAAYQEAQANLSGGLLEFFLRIPDLKNLANDSKAGMFQIRPLLDAARLDAVHSIGGHVTFEGAKTHVQAAILGEAVSGTLFDIWSTGQQSPASLAFAPVNAVSYTSAQVNFQGIYDTLKRVAGAAFPQTHQGNVDLIDAMAQQKLGMPVADALGLLSGEFASMQTSPSLDTAKQVYFFGIRKKPETLKLMRTVFSDQITSERNEGDVTFVKISLGGKKASEGVAQWNFFNLAVTPDMILGASKMETLREALERRTGGTTGAGLASVPQFAAGRQQFPEKLIGLSYFDFQRVDWAAARDRWVAESKKSSVVKSMNSSTPSTAMANANEWLQQMNPQVISRHLHRSLSVSWKDSKGIHWDQWVE

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