Scaffold Ga0066655_10000415

Overview

Basic Information

• Taxon OID: 3300018431
• Scaffold ID: Ga0066655_10000415
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13921
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005666	Metagenome / Metatranscriptome	393	Y
F010795	Metagenome / Metatranscriptome	299	Y
F014602	Metagenome	261	Y
F032054	Metagenome / Metatranscriptome	181	Y
F063022	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066655_1000041512	F063022	GGAG	MFPCLIVDRSQEGFRLRGSFRLKRGQLVEIVLDDPVDSVQCEVEWTGKTELEQVGEVGLQIVGKMTFGLRTRSR
Ga0066655_1000041513	F014602	AGG	MIDSWTKKFPSGKTVTFKIEGDRKSGFVYSAKMDGRDIREITGFLEELTREGVEVMFANYVAGK
Ga0066655_1000041514	F010795	N/A	MMSFRELVVSSYPARANDIVKAVHLLRQHGIAVGFPMQTADGEIIFPVGKDFTLTADQMLELLERGELDAEGVRRSVEAQAATRRRAASS
Ga0066655_1000041515	F032054	N/A	MRTLYDILKKDRKGTFQWLETVKDIETAKARVLQLSSESLDEFIVFRGTDLQVVATSQAMQTDTEVLREFPQQRLQFFAD
Ga0066655_100004156	F005666	GGAG	MKAWTIRISLVVAALMAVCVADVARAQAPLEPAQMSPRTLFYLIWRGVPSPDARKANALLALWDDADFAPVRSAMVAGMLGSSDEKSTQPKLTPEQVQEFAGLLENSFTLGYWSEPTRRNLSNGAAVTEAKVPAWNGMFFVYDRTGKEMLLTKAVLRMRAEEKEAPRLSQVAIAGVQVLKAEGKGGATYWAEHGKFAVSAGEKLVMEDLLSRLDGKISGGASLVQSAAYQEAQANLSGGLLEFFLRIPDLKNLANDSKAGMFQIRPLLDAARLDAVHSIGGHVTFEGAKTHVQAAILGEAVSGTLFDIWSTGQQSPASLAFAPVNAVSYTSAQVNFQGIYDTLKRVAGAAFPQTHQGNVDLIDAMAQQKLGMPVADALGLLSGEFASMQTSPSLDTAKQVYFFGIRKKPETLKLMRTVFSDQITSERNEGDVTFVKISLGGKKASEGVAQWNFFNLAVTPDMILGASKMETLREALERRTGGTTGAGLASVPQFAAGRQQFPEKLIGLSYFDFQRVDWAAARDRWVAESKKSSVVKSMNSSTPSTAMANANEWLQQMNPQVISRHLHRSLSVSWKDSKGIHWDQWVE