Scaffold Ga0190265_10016686

Overview

Basic Information

• Taxon OID: 3300018422
• Scaffold ID: Ga0190265_10016686
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5730
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 37.9813
  • Long. (^o): -109.5168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020982	Metagenome / Metatranscriptome	221	N
F041239	Metagenome / Metatranscriptome	160	N
F073806	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190265_100166862	F041239	N/A	MPDRGLGLSALWEERDYKACGVSMECRGRFILGKLFDRDTPMLKAAWLAAFGTRVLGPPEIRTDEITKAQWQVILSHMGASPDEIADVQIRMGRA
Ga0190265_100166863	F020982	AGGA	MARRHFMGNRTYKGLTYTLELEAIEENVFKAHARLSPSGPEVSIVDETSDAALKQAEAGIRQVIEQREAGAVVRERLPERTYGDVKYTIIVRTEATRVVAELYFIRANAQPRRPGPGIFFALFEGKTKQGAIGQAERGLKAKLDKERAGTTAGRSSR
Ga0190265_100166864	F073806	N/A	MTYSTEDFVRHSLPRILHSVKYRNTFVCLSCLVTMTLERLHPGWRPAEIARALDRVYAAPGVPMESRPAFRCAACRTVKPCLGSPYL