Scaffold Ga0181563_10141212

Overview

Basic Information

• Taxon OID: 3300018420
• Scaffold ID: Ga0181563_10141212
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1526
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019319	Metagenome	230	N
F025023	Metagenome / Metatranscriptome	203	N
F040082	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181563_101412122	F040082	AGGAG	MTGDTYAMSQEIVELQTRVSELMVALERVTEQRDNAVDSAESLHKELEASRDRIKTLGGQLDRLRIHIQQGIEL
Ga0181563_101412123	F019319	GGAGG	MTKKDIQDAIRFLEKQFVGVGEQDRLFEVIAALKEELARRNKR
Ga0181563_101412125	F025023	N/A	DSLRPHQRAMVKKIATECNEYGHSISLDQLKSHRRYQIGRGLVDLIMSDNCDELLITSLCHSIQGVLFKTAGGAVGHLDAACAEQFAVLCRAIRWDEQDIVWNTSTDSFGFPSKEKEVSNVR