Scaffold Ga0181553_10153110

Overview

Basic Information

• Taxon OID: 3300018416
• Scaffold ID: Ga0181553_10153110
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1370
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019319	Metagenome	230	N
F025023	Metagenome / Metatranscriptome	203	N
F037220	Metagenome / Metatranscriptome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181553_101531102	F019319	GGAGG	MTKKDIQDAIKFLEKQFVGVGEQDRLFEVIAALKEELARRNKR
Ga0181553_101531103	F037220	GAGG	MSDEQDLLAGGGPKLPSLKFEKIGDTHSGIVTDVKKLEDRDPAGVAKTWPNGDPRFVYVITLKTEKEGDANIWARGAMITAIREAAKQASVTELTGNKLAVRYSADGDKKPGFNAPKLFAAKVEKVATDDRW
Ga0181553_101531104	F025023	AGG	MTDTFEGRTYDTGVDRTCVLQLQTDFDSLRPHQRAMLKKIATECNEYGHSISLDQLKSHRRYQIGRGLVDLIMSDNCDELLITSLCHSIQGVLFKTAGGAIGHLDAACAEQFAVLCRAIRWDEQDIVWNTSTDSFGFPSKEKEVSNVR