Scaffold Ga0181553_10055324

Overview

Basic Information

• Taxon OID: 3300018416
• Scaffold ID: Ga0181553_10055324
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2610
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: unclassified Hyphomonas → Hyphomonas sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002594	Metagenome / Metatranscriptome	545	Y
F019311	Metagenome	230	Y
F027183	Metagenome / Metatranscriptome	195	N
F082722	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181553_100553241	F002594	N/A	MAKIPTSRLNTAPKEYEKIDFDQLIEDLQDMIKLLNTTYPKDIVDEEDKKAWF
Ga0181553_100553245	F019311	AGG	MNHTFKHPSKYKKEVKETKYVPIRECKVGKKYRFEEHEHTVVDYEYNYSYMTGTCVTNETGPNIVFDKKEQLIEIKLDFPRPELQGEFDNKLMFFFPHDEAMYDDVKVVEYE
Ga0181553_100553247	F027183	AGGAG	MVNCRECWDDGYIWTHPSGSDFDKPRFEKCDACGIFKDDNEAQAKANSRSYYVVWWNGYNVNKDGKPHSSEIRHEDITENNGWHEEDIDEISSLSIGEKYNTGGPIEQVTLFRWK
Ga0181553_100553248	F082722	AGGAG	MIRKCGNCEREEDHEGQFDCEDWNEDQAVILCDDCFFNDLYKKGEINGKL