NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181553_10042010

Scaffold Ga0181553_10042010


Overview

Basic Information
Taxon OID3300018416 Open in IMG/M
Scaffold IDGa0181553_10042010 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3109
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC100P(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008684Metagenome329Y
F020461Metagenome224Y
F029563Metagenome / Metatranscriptome188Y
F042019Metagenome / Metatranscriptome159N
F057389Metagenome / Metatranscriptome136N
F060808Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0181553_1004201012F042019AGGAMSKGEKLILLVSGEVSISPNLLMDDSNFIKQAKKLISQKLDFYTIKDKLVDWCNNNY
Ga0181553_1004201013F057389N/AMTTYKSAYKTTTFVEDKKINVIHHSTKIIEHDVENNTIKLNNGGWYSKTTKDRMHSYLITNANFRLYQKKGNWFIDQVDKSNDYKTIKTIPYENNMILKVA
Ga0181553_100420102F020461AGGMYIDKYKVEIKGSKYHEKTDKRMKDQVLATYQSDEGMNIKSLKNILEELADSHNAHHDITFNIVMKQYDHD
Ga0181553_100420105F060808GAGGMAIDFDALDLIRTKNKAKRHEAIKQQQREQKEKDIKYFMNQLSEIKRDHDLCNDPAVKKLLLDKWLGVVKLCTKKIEEK
Ga0181553_100420107F008684GGGGGMTNKNFELACELADDLYFKFIDNLSDDIASEFVVDDKKNIGSTKNTEKGSNLYWELESTIKNALDKQKESETKXLMLISTAA
Ga0181553_100420109F029563N/AMKVYNISFVELVTSQVKIKAKTLEEAKEIVNSGDFTGDEVIDRDNFEITESYEESE
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