Scaffold Ga0181559_10070694

Overview

Basic Information

• Taxon OID: 3300018415
• Scaffold ID: Ga0181559_10070694
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011508AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2243
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010615	Metagenome / Metatranscriptome	301	Y
F055556	Metagenome / Metatranscriptome	138	N
F060720	Metagenome	132	N
F073265	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181559_100706941	F055556	N/A	MKNHKENTTLDHIVKGGEKIFYSACVVLACCLGGSIMLLIAALIAQF
Ga0181559_100706943	F073265	N/A	MKKTEAYITASKFYLSEPLPENFDELDEQDVTDFIRDNKWQPFEEWEAHGIWELIEDLAAEFLNVTKNLK
Ga0181559_100706944	F010615	N/A	MKTIQLEGIELRPDKYFDITVEAEAVTTHCESSSEAGESLVTEAWEERDLDGFDIVSLVYWPNEDTPVDLPTIVLTHADRATIYEETLRYI
Ga0181559_100706946	F060720	AGGA	MKDKQQSLNIEDRYWEVDFFADKLRAAGKLIAEESITQDFCKEMQEEAIAALKAIYERASAHRDYLKEIRDSVDAEEDKELARIQEEAVKRLNKGIKELASKLNK