Scaffold Ga0184625_10069647

Overview

Basic Information

• Taxon OID: 3300018081
• Scaffold ID: Ga0184625_10069647
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1786
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009497	Metagenome / Metatranscriptome	317	Y
F101518	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0184625_100696471	F009497	N/A	LTDAMWRRTSGTNMTWLYTVTSNPLALLISALRVIGILGFALLAGFFIIQDAYLETTLSVLTTLAWIAATTEAMDLVLERYS
Ga0184625_100696473	F101518	AGGAG	MRRLLLVTSVLCAIDTTQAFAQHVVSQQLLELEEADRNIFFTMLLHGSNKRCDQVIRTLFNAAYLDVDEWEALCRDHNSYSLNVPADPDATITSLHCRELSTTSKMLLQSVGSRNKASGCRIKGERRKRH