Basic Information | |
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Taxon OID | 3300018081 Open in IMG/M |
Scaffold ID | Ga0184625_10066214 Open in IMG/M |
Source Dataset Name | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1829 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: East River, Colorado | |||||||
Coordinates | Lat. (o) | 38.9195 | Long. (o) | -106.9496 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F001053 | Metagenome / Metatranscriptome | 792 | Y |
F071597 | Metagenome / Metatranscriptome | 122 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0184625_100662141 | F001053 | GAGG | MIWRNKLKERLPLPRILGMNKALVKLAKLHLRVLLTIAASVAPLNFTKADTLTAEEQALVDKGAVMEMYKPDEHSRHFIAHIDSVTDPKTKKASRTANNPQAVVCFVFGMEDAEPARKEGRSMAECHYSPSQAHEFLFAQGWDKYHDRFFTRCYVQEGEAAYDKEVQNQQKHV |
Ga0184625_100662145 | F071597 | AGGA | MSLTAITVQFPDESVELDNVKERRVLTTLKMMYEGGSLDGKTANFPTR |
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