Scaffold Ga0184619_10246312

Overview

Basic Information

• Taxon OID: 3300018061
• Scaffold ID: Ga0184619_10246312
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 822
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F007262	Metagenome / Metatranscriptome	354	Y
F066970	Metagenome / Metatranscriptome	126	Y
F090360	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184619_102463121	F007262	N/A	YRTTRQKQRIYSVDDWSGFTSELAGPSTLFFLLLTAILTGFAVALIVGHLVNGQIF
Ga0184619_102463122	F090360	N/A	MAAAPPFVSYSTMSEASVPSSEWSYLYGSLQAYKAHVQEYPGCQKMELFAAIDDDGAMRVHCYTVWDTPEQLEIFLEIGYTFERMLADASSDARVERSLVMEKLF
Ga0184619_102463123	F000280	GAGG	MPARPLAGYRDVGPDVRHSRRNHMRAWIILAFLVAIYLGWTLTVYFFEPGLR
Ga0184619_102463124	F066970	GAGG	MWVQHLSSLDFLTYVAFFGVVVAVICRFVPGKAAPVRTEPYSEDELARH