Scaffold Ga0184626_10000231

Overview

Basic Information

• Taxon OID: 3300018053
• Scaffold ID: Ga0184626_10000231
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15524
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (74.19%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003830	Metagenome	466	Y
F022290	Metagenome	215	N
F031783	Metagenome	181	Y
F067038	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184626_1000023112	F003830	GGAG	MMIDDDTLKQLLRINDELLQLCKWLNEKRDMETSSRLILLVDDFTHVLIEAGKNKLH
Ga0184626_1000023113	F031783	N/A	MLLAGCASQQPPQSPVSQQPSGLSDTPKSQLNKNRDRDLYECEREAAFAGAGDKRQVFDKCMKARGY
Ga0184626_1000023117	F067038	AGGA	MERYHKSYRIICRSDRDPENNLFRALITIETSPGPVYCENTTPCREPATGRFKNEREAESYGVEWGMGAIDQGFMEGNFYRRLP
Ga0184626_100002312	F022290	GGA	MNTVDLECLKEKEDAAIKIIDSWPRIFQLLIYRQLYAFGIRISNIDSEIEKELKKSA