Scaffold Ga0181606_10098641

Overview

Basic Information

• Taxon OID: 3300018048
• Scaffold ID: Ga0181606_10098641
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1844
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026152	Metagenome	199	Y
F026154	Metagenome / Metatranscriptome	199	Y
F080091	Metagenome / Metatranscriptome	115	N
F089160	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181606_100986413	F080091	GAGG	MSLKLWKLLSIRIKIEDHNGKIHWYDETDCDEHGLGLEYDITDIIKHQGGTLHEEEVGKNKEDI
Ga0181606_100986414	F026152	AGGAGG	MKKKLEKTKKIYKTPKFWTAKAWAEHMLHISGFTDAKEVKSVQSNTRGKVSRKSNKSKQSSETTV
Ga0181606_100986415	F089160	AGCAG	VKLLYNQDFTGSIRLENILWWKKYFLKVIHLRVLYPKTGYIQIVKIYRDKKPSIRVITIPSSPDKRELLVLNKIYGGNNG
Ga0181606_100986417	F026154	AGGA	MNGIINIVRFVAYSVGGLAVRKAWNWLIEDVDPIPGSKEFDNEYYHTKSKYIRLTKLKEKHEAYRKSRRDNS