NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187851_10134358

Scaffold Ga0187851_10134358


Overview

Basic Information
Taxon OID3300018046 Open in IMG/M
Scaffold IDGa0187851_10134358 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1510
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003157Metagenome / Metatranscriptome504Y
F004392Metagenome / Metatranscriptome440N
F066496Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0187851_101343581F066496AGGAGMSEKNQIVVVLIVALFLGALIDRSTALKIVAGVVLLWTLQNQPAVFECIRKLF
Ga0187851_101343582F004392AGGAMPVNGPETIADSKTSQPVASEGRSVRTATEAKPAAGRGAATRRRRDRQEISKTNGEERFFLASANRNGDVPALGCECATEAEAIIEAFREKVNLYKVTEFQTRADIGPSGEPILRKETLKKTNPAS
Ga0187851_101343584F003157AGGGGGMLDSDANQKSENTDPLRFASFGGLDRLDWLMIVVSVLLGTVAKQHHVLDLPDWFLEWVSPFLLMVFGYKARRKITELVQSRREREQNTTEK
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