Scaffold Ga0181600_10009821

Overview

Basic Information

• Taxon OID: 3300018036
• Scaffold ID: Ga0181600_10009821
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7007
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009440	Metagenome	318	Y
F012861	Metagenome	276	Y
F065802	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181600_1000982117	F012861	N/A	LICSIMNVKVCVGFSMKEFDRMRQKLIDLEEIDFTNDEYHLVFQMAGYDILTNSEMRTLILAFCEKLNPELSPREYDNIKDHHVDLTE
Ga0181600_100098216	F009440	AGGA	MKAKDYKSITEILTKKYQCKFYSFMDLKDCENRIKQKRKDRQ
Ga0181600_100098217	F065802	GAGG	MIILGKTPKEWRKEIGSKSLYYRTEIVIFLIGFILGSIIF