Scaffold Ga0184634_10033422

Overview

Basic Information

• Taxon OID: 3300018031
• Scaffold ID: Ga0184634_10033422
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2049
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013020	Metagenome / Metatranscriptome	275	N
F087961	Metagenome	110	Y
F099530	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0184634_100334223	F013020	N/A	MSTDNNNIIKKQEQLKLDSLNKIFGWIEDKETKAVMINKYYNNKEHRATLKAFLDDMVKALDESTAETNSKEEIKRQLSYIIREIDPLY
Ga0184634_100334224	F099530	N/A	MNDNNEERREDRNRKMSLEEDKSILEERIDLFEKSLANTGIGLKLTREEIIHIVKSDPAEFLKLLMEMERFSQEMIKRGRGITK
Ga0184634_100334225	F087961	N/A	TFLISNSHSLKLEETAKGVRISVHVYTNDKETAIHEAIATYLETKQMCEKEKIQIAPMEKSK