Scaffold Ga0184608_10013663

Overview

Basic Information

• Taxon OID: 3300018028
• Scaffold ID: Ga0184608_10013663
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2822
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036581	Metagenome	169	Y
F046226	Metagenome	151	Y
F047542	Metagenome / Metatranscriptome	149	Y
F051821	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0184608_100136631	F051821	N/A	NSGTQFNPVVVEAFITTVVGERRKSARGAESPHQQVYQQAVEAVRVQL
Ga0184608_100136632	F047542	AGGGGG	MKQTIKGFAFAAMLALSLVASTSGALAKDAKAGRETAWTDLGPLPIPQGVTWETTPLDPVGVTWEE
Ga0184608_100136633	F046226	GGA	VITAVRTPIRSLGAILFAALLALSLIASTVDALAASPLGDHSTRGSQTEGREFFHGRGISWE
Ga0184608_100136636	F036581	N/A	MGCLRLLFFQLWKVLLAALIALVFARVDSHVETRYPDSTAGKAWRAYRSRGKKKTT